PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010893-RA_Salv
Common NameMYB28
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 219aa    MW: 24782.1 Da    PI: 9.1872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010893-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  SMil_00010893-RA_Salv 14 KGAWTKEEDQRLISYIRAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                           79******************************99************97 PP
2Myb_DNA-binding582.2e-1867111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T+eEde +++++ +lG++ W++Ia +++ gRt++++k++w+++
  SMil_00010893-RA_Salv  67 RGNFTEEEDEVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                            89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.602961IPR017930Myb domain
SuperFamilySSF466891.16E-2913108IPR009057Homeodomain-like
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002497.0E-161461IPR001005SANT/Myb domain
CDDcd001675.69E-111661No hitNo description
PROSITE profilePS5129428.9362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2865116IPR009057Homeodomain-like
SMARTSM007175.0E-1766114IPR001005SANT/Myb domain
PfamPF002492.6E-1667111IPR001005SANT/Myb domain
CDDcd001671.40E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLISYIR AHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDEVIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLRRG  120
MDPQTHRQIN NRSPTPPLPP EQNNSSSADN STTTTAEEDG GLDLDLSIGI RPSHIKTASF  180
NSPPEVRAMC VCWQLGFGKG QLCINCQSYN GFIHLLTNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30141167108B-MYB
1h8a_C2e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593820.0KF059382.1 Salvia miltiorrhiza MYB-related transcription factor (MYB28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096483.11e-98myb-related protein 330
SwissprotP813952e-93MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A059PSL81e-162A0A059PSL8_SALMI; MYB-related transcription factor
STRINGMigut.C01291.1.p1e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-89myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]