PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010867-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 156aa    MW: 17792 Da    PI: 8.8948
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010867-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.2e-171871356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           ++ ++++eq++ Le+ F+ n++++ e++ +LA +lg++ rqV +W+qN+Ra+ +
  SMil_00010867-RA_Salv 18 HKKRLSEEQVRLLESNFNFNNKLDPEHKSRLALELGVPPRQVAIWYQNKRARNR 71
                           67789***********************************************98 PP

2HD-ZIP_I/II102.53.6e-3318108292
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            +k+rls+eqv+lLE++F+ ++kL+pe+K++la eLg+ prqva+W+qn+RAR + + lE+d++aL+ ++d++ ++n+rL++ev++Lr 
  SMil_00010867-RA_Salv  18 HKKRLSEEQVRLLESNFNFNNKLDPEHKSRLALELGVPPRQVAIWYQNKRARNRIQGLEVDHKALQLQLDTVLADNSRLKEEVQRLRL 105
                            79*************************************************************************************8 PP

            HD-ZIP_I/II  90 elk 92 
                            el+
  SMil_00010867-RA_Salv 106 ELT 108
                            886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.42E-16971IPR009057Homeodomain-like
PROSITE profilePS5007115.5161373IPR001356Homeobox domain
SMARTSM003893.0E-131577IPR001356Homeobox domain
CDDcd000861.21E-121773No hitNo description
PfamPF000462.3E-141771IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-161976IPR009057Homeodomain-like
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDDQFPYPTI RKQQQIKHKK RLSEEQVRLL ESNFNFNNKL DPEHKSRLAL ELGVPPRQVA  60
IWYQNKRARN RIQGLEVDHK ALQLQLDTVL ADNSRLKEEV QRLRLELTRA SFASPSSGDE  120
ASNLVSRDNL ERDLYASLVG AGGGPFGAPD GYDFFG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096367.13e-61homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A4D8Z3B81e-73A0A4D8Z3B8_SALSN; Homeobox-leucine zipper protein
STRINGXP_009800499.16e-40(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-25homeobox protein 52