PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010867-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 156aa MW: 17792 Da PI: 8.8948 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.4 | 4.2e-17 | 18 | 71 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++++eq++ Le+ F+ n++++ e++ +LA +lg++ rqV +W+qN+Ra+ + SMil_00010867-RA_Salv 18 HKKRLSEEQVRLLESNFNFNNKLDPEHKSRLALELGVPPRQVAIWYQNKRARNR 71 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 102.5 | 3.6e-33 | 18 | 108 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k+rls+eqv+lLE++F+ ++kL+pe+K++la eLg+ prqva+W+qn+RAR + + lE+d++aL+ ++d++ ++n+rL++ev++Lr SMil_00010867-RA_Salv 18 HKKRLSEEQVRLLESNFNFNNKLDPEHKSRLALELGVPPRQVAIWYQNKRARNRIQGLEVDHKALQLQLDTVLADNSRLKEEVQRLRL 105 79*************************************************************************************8 PP HD-ZIP_I/II 90 elk 92 el+ SMil_00010867-RA_Salv 106 ELT 108 886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.42E-16 | 9 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.516 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-13 | 15 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.21E-12 | 17 | 73 | No hit | No description |
Pfam | PF00046 | 2.3E-14 | 17 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 19 | 76 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MDDQFPYPTI RKQQQIKHKK RLSEEQVRLL ESNFNFNNKL DPEHKSRLAL ELGVPPRQVA 60 IWYQNKRARN RIQGLEVDHK ALQLQLDTVL ADNSRLKEEV QRLRLELTRA SFASPSSGDE 120 ASNLVSRDNL ERDLYASLVG AGGGPFGAPD GYDFFG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096367.1 | 3e-61 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A4D8Z3B8 | 1e-73 | A0A4D8Z3B8_SALSN; Homeobox-leucine zipper protein | ||||
STRING | XP_009800499.1 | 6e-40 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-25 | homeobox protein 52 |