PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010861-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 123aa MW: 13486.1 Da PI: 9.4818 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 9 | 58 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g++v+eIr p++ r r++lg+++ ae+Aa+a +aa +l+g SMil_00010861-RA_Salv 9 KYRGVRKRK-WGKYVCEIRLPNS---RERIWLGSYDAAEKAARAFDAALFCLRG 58 8*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.96E-24 | 8 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 9 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-20 | 9 | 67 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.219 | 9 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-30 | 9 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-10 | 9 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MSGTAAEAKY RGVRKRKWGK YVCEIRLPNS RERIWLGSYD AAEKAARAFD AALFCLRGRA 60 AKFNFPDDPP DIPGGESLSP SEIQAVAQRY GKSYGSGRLP QAAEDGFRAR ASEDSARVDL 120 IDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 5 | 68 | 10 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855787.1 | 5e-49 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q9C591 | 2e-42 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A0A4D8ZP08 | 1e-53 | A0A4D8ZP08_SALSN; Uncharacterized protein | ||||
STRING | Migut.A00330.1.p | 3e-48 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-35 | ERF family protein |