PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010851-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 39393.8 Da PI: 4.6947 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 119 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g SMil_00010851-RA_Salv 119 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDIEARRIRG 168 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.999 | 119 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-37 | 119 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-32 | 119 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.05E-32 | 119 | 176 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-22 | 119 | 177 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-11 | 120 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-11 | 120 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MCGGAIISEI TPPTSLSSRR LTADLLWGSG AAALRKKKNN CNYYSKPLRS RPISDFDDDF 60 EADFQDFEDY SDEEEELDLK KPFAFSAPKN IGVKAHKSLD PAESDEDAEK SSKRKRKNQY 120 RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD IEARRIRGNK AKVNFPKMFQ 180 SLQLQSAHLS MLSNNYYDSL SLMEEKPQMK QYGYGDVGLK PLTPSDGSSV YFSSDQGSNS 240 FGCSDFIWSD NCVKNPEVSS VLTTAVENDD QPLDSDIPRP AKKAKPSPEN MVVPDSSDLS 300 EFDSQMKLFQ MPYLESNWDA SIDALLSGGV NQDGGSALDL WSFDDIAAMG GVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 119 | 176 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072679.1 | 1e-167 | ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
TrEMBL | A0A4D9BEE2 | 0.0 | A0A4D9BEE2_SALSN; EREBP-like factor | ||||
STRING | Migut.I01124.1.p | 1e-153 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 7e-57 | related to AP2 12 |