PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010832-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CPP
Protein Properties Length: 766aa    MW: 82858.1 Da    PI: 5.8566
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010832-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.11.1e-15469506239
                    TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++k+CnCk+skClk+YCeCfaag++C e C C dC+Nk
  SMil_00010832-RA_Salv 469 SCKRCNCKRSKCLKLYCECFAAGVYCVEPCACIDCFNK 506
                            689**********************************8 PP
2TCR51.32.3e-16554592139
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  SMil_00010832-RA_Salv 554 RHKRGCNCKKSGCLKKYCECYQGGVGCSVNCRCEGCKNA 592
                            589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.7E-18468509IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.081469594IPR005172CRC domain
PfamPF036388.0E-12471506IPR005172CRC domain
SMARTSM011147.6E-18554595IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.9E-12556592IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MEERVEIYAK ESSREVLEVM DTPERSKNSQ IAASISKFED SPVFTFLNSL SPIKPVKSTH  60
ITQTINPLSF ASIPSVFTSP TLVLHQLSDP SKPEFSSDDG AKLDTNKANA DASKQLDDQK  120
ESGDGDVAAE PSYDCSKFVV DFASPNSNLR PGCGLEGKGM ADYGCSSSAL VQLTREPPQR  180
GEVNIDGVNQ NREAAGSCDW EHMISDTSEL LVFESPVDRD SYSKSVDPGT SFYTGIKSDM  240
QNLHLICAVD SGEHVVVGNE AETLSTQPGE GDEMDNAIIA GPSLSNSDEK LDYEQLGFYR  300
GMRRRCLVFE MGGARRKHLE ENPVSDSSVW LCSDGNTTSN DQKLAPVNRG NESSRCLLPG  360
IGLHLNALAT TPKDYKVVNP DSSSSARLLI GPSSVVNLHP SHPSSVGQGL LDNILPAATS  420
DRDVDSMENA VLPAEDACPL SAYAANEEIN QGSPKKKRRR TEQAGEGESC KRCNCKRSKC  480
LKLYCECFAA GVYCVEPCAC IDCFNKPIYE DTVLATRKQI ESRNPLAFAP KVIRGSDSPS  540
EIGDDSSKTP ASARHKRGCN CKKSGCLKKY CECYQGGVGC SVNCRCEGCK NAFGRKDGTE  600
AEAEEEDETE ASEKSSSDKV CRRCNGERRG TQHGHRASCN AFTWRKVNCA NRVSSSAQLP  660
FSSKKKPPRS SFPSIASSSS SFLPRQGFGK SSFFPPPPKF ETIREDEIPD FLQGGGSPDG  720
GVQSSSPNRK RVSPPHNAGS TSPGLRSSRK LILESIPSFP SLTPNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1847159112120Protein lin-54 homolog
5fd3_B4e-1847159112120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454459KKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090684.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
TrEMBLA0A4D8Y2U90.0A0A4D8Y2U9_SALSN; Uncharacterized protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-112TESMIN/TSO1-like CXC 2