PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00010803-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 103aa MW: 11286.7 Da PI: 4.3576 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 42.5 | 1.9e-13 | 22 | 72 | 48 | 98 |
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++p ++r da++slvyeA r+++PvyG++++i +lq+++ ql++el+++ SMil_00010803-RA_Salv 22 DVPVTDRGDAVASLVYEATTRLQQPVYGCIALIASLQKRVFQLQSELDEVS 72 678899****************************************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 5.1E-12 | 21 | 71 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 103 aa Download sequence Send to blast |
MVVNGGEVRD EGEKVVIENE GDVPVTDRGD AVASLVYEAT TRLQQPVYGC IALIASLQKR 60 VFQLQSELDE VSATTMRLRT QLSSVLSFIG SAESWLQKRG EQS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016503569.1 | 8e-21 | PREDICTED: LOB domain-containing protein 25-like isoform X1 | ||||
Refseq | XP_016503570.1 | 7e-21 | PREDICTED: LOB domain-containing protein 25-like isoform X2 | ||||
TrEMBL | A0A1S4CR38 | 2e-19 | A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2 | ||||
TrEMBL | A0A1S4CRC5 | 2e-19 | A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1 | ||||
STRING | Solyc06g082770.2.1 | 1e-18 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400071132 | 5e-19 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13147 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27650.1 | 5e-14 | LOB domain-containing protein 25 |