PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010803-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 103aa    MW: 11286.7 Da    PI: 4.3576
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010803-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26042.51.9e-1322724898
                 DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
                           ++p ++r da++slvyeA  r+++PvyG++++i +lq+++ ql++el+++ 
  SMil_00010803-RA_Salv 22 DVPVTDRGDAVASLVYEATTRLQQPVYGCIALIASLQKRVFQLQSELDEVS 72
                           678899****************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031955.1E-122171IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MVVNGGEVRD EGEKVVIENE GDVPVTDRGD AVASLVYEAT TRLQQPVYGC IALIASLQKR  60
VFQLQSELDE VSATTMRLRT QLSSVLSFIG SAESWLQKRG EQS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503569.18e-21PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_016503570.17e-21PREDICTED: LOB domain-containing protein 25-like isoform X2
TrEMBLA0A1S4CR382e-19A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2
TrEMBLA0A1S4CRC52e-19A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRINGSolyc06g082770.2.11e-18(Solanum lycopersicum)
STRINGPGSC0003DMT4000711325e-19(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131471419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.15e-14LOB domain-containing protein 25