PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010780-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | SBP | ||||||||
Protein Properties | Length: 388aa MW: 41697.1 Da PI: 8.4781 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.6 | 6.5e-42 | 102 | 177 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC +dls+ k y+ rhkvC hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ SMil_00010780-RA_Salv 102 RCQVEGCMVDLSDSKAYYCRHKVCGEHSKSPMVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 177 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-34 | 96 | 164 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.77 | 100 | 177 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-39 | 101 | 181 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-32 | 103 | 176 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
LREKEKHYFS ASHSPSWHHG PFVRYERGGV AIKKMEKGSS SSSSSSGGGG ADSINGLKFG 60 KKIYFEGVGS RIGGGEEEEA APPRSPAKKG RTAVVQGGQP PRCQVEGCMV DLSDSKAYYC 120 RHKVCGEHSK SPMVIVAGLE QRFCQQCSRF HQLPEFDQGK RSCRRRLAGH NERRRKPPPG 180 PLLSSRYASL SPSVLTGGGL ETDFSAYSTF GGRDPWPDSS KQRGLADQTT STGNFQLPWQ 240 MSSQASPPNL LQGSTTRSSY TAAEDCFSGI SDSTSALSLL SNEPWGSRSQ ALDLGVSSFL 300 AAANGAAGVD PGTPVGRYSS CPSWDFKGDH SLHEMPPDMG LGQISHSHPT NTPYSMDLGL 360 ARPGDGRRHE LEPSGGYDSS GHHMNWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 103 | 176 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF437887 | 0.0 | KF437887.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 11 (SPL11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078846.1 | 1e-145 | squamosa promoter-binding-like protein 17 isoform X1 | ||||
TrEMBL | A0A075FFN0 | 0.0 | A0A075FFN0_SALMI; SQUAMOSA promoter binding protein-like 11 (Fragment) | ||||
STRING | VIT_08s0007g06270.t01 | 1e-107 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4571 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-54 | squamosa promoter binding protein-like 9 |