PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010650-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29491.5 Da PI: 9.7135 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68 | 1.4e-21 | 20 | 110 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkv ++s+++++p +f++++ + + +++l++++g+ W+v++ ++++++++l++GW +Fv+ +gLk+g+f+vF+++g+ SMil_00010650-RA_Salv 20 FFKVY--LPQFSSHQIRIPPDFTKNFRR--ALNEKVILKNKDGKAWSVEV--KRTPEGVFLKDGWPRFVDYHGLKVGEFLVFRYNGSY 101 77777..788999**********77753..35669***************..********************************9988 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v++f + SMil_00010650-RA_Salv 102 SF--LVQIFGT 110 88..9999975 PP | |||||||
2 | B3 | 32.8 | 1.3e-10 | 172 | 254 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++l +p + + ++++++ + ++ l++ +g++W v++ y+ g ++l++G F k+n++ +D + F + ++++ vk++r SMil_00010650-RA_Salv 172 SRRRMLKIPEEVM-NNENVH-LEAEVNLRNAEGKEWPVNI-YTMLNGPTFLGRGLCAFQKDNNVGPKDCCKFIFG--NQTTIDVKILR 254 4567899****99.776664.668****************.666666699**********************963..57777888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 15.354 | 18 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-25 | 19 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-24 | 19 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.7E-20 | 20 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.62E-17 | 20 | 108 | No hit | No description |
SMART | SM01019 | 3.2E-18 | 20 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.769 | 162 | 255 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-11 | 165 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-11 | 168 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.1E-8 | 172 | 254 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MARKRGRKGR FVSTVEGAEF FKVYLPQFSS HQIRIPPDFT KNFRRALNEK VILKNKDGKA 60 WSVEVKRTPE GVFLKDGWPR FVDYHGLKVG EFLVFRYNGS YSFLVQIFGT NGCKKEKFGP 120 QDIASHVKSE VESDNDDSSS VDRSKLFKRF EEEEEDNNNE FPKRPSFVSP PSRRRMLKIP 180 EEVMNNENVH LEAEVNLRNA EGKEWPVNIY TMLNGPTFLG RGLCAFQKDN NVGPKDCCKF 240 IFGNQTTIDV KILRH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D8XRI5 | 1e-85 | A0A4D8XRI5_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3779 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-20 | B3 family protein |