PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010649-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 272aa    MW: 31424 Da    PI: 9.7925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010649-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43.1e-1931122199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                            ffk+    ++l+s+ l++p +f+e++gg+   ++t t+e  ++g sW+v+l  ++  ++ +++kGW +Fv++n L+egDf++F + g+
  SMil_00010649-RA_Salv  31 FFKIY--MSALSSKFLRIPPDFIEKFGGN--IPTTCTIERqPRGVSWQVEL--NRVNDGWFFQKGWPNFVEDNLLREGDFLTFCYLGK 112
                            67777..77889999***********988..5556666666**********..88888889*************************98 PP

                            SEE..EEEEE-S CS
                     B3  88 sefelvvkvfrk 99 
                            s f  +vk+f+ 
  SMil_00010649-RA_Salv 113 SLF--YVKIFSP 122
                            888..9999985 PP

2B340.84e-13180267595
                            -..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                     B3   5 ltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                            l++ +   s+ +++p +f ++h       ++ k+ tl   +++ W+v +    ++++++++kG  +F k+n +k+g +++F+l++ ++
  SMil_00010649-RA_Salv 180 LMKTHIK-SRSMCIPTPFWSAHmktI--ITSRKEATLWV-ENKAWNVGV--VYYDNKVLFQKGCAQFFKDNSIKVGTSCTFQLIDPDQ 261
                            5555555.555***********7532..33344444333.55*******..778888***************************9899 PP

                            E..EEE CS
                     B3  90 felvvk 95 
                            f+++v+
  SMil_00010649-RA_Salv 262 FSFRVT 267
                            966664 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-2325125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-2227125IPR015300DNA-binding pseudobarrel domain
CDDcd100177.58E-1729121No hitNo description
PROSITE profilePS5086314.26929123IPR003340B3 DNA binding domain
PfamPF023626.6E-1731121IPR003340B3 DNA binding domain
SMARTSM010193.4E-1731123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-16172266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-15172266IPR015300DNA-binding pseudobarrel domain
CDDcd100178.23E-12174267No hitNo description
PROSITE profilePS508637.613175270IPR003340B3 DNA binding domain
SMARTSM010197.5E-9176270IPR003340B3 DNA binding domain
PfamPF023629.6E-11180266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMKRKRGRPR KIHSNNLDEE IVNGNDNLPE FFKIYMSALS SKFLRIPPDF IEKFGGNIPT  60
TCTIERQPRG VSWQVELNRV NDGWFFQKGW PNFVEDNLLR EGDFLTFCYL GKSLFYVKIF  120
SPNGCEKEGA GSSKLDESSP SVKICADTYE TKRKHWRRIS SRWGSSVAYI NGNPSFSIVL  180
MKTHIKSRSM CIPTPFWSAH MKTIITSRKE ATLWVENKAW NVGVVYYDNK VLFQKGCAQF  240
FKDNSIKVGT SCTFQLIDPD QFSFRVTSRI DD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9BAS97e-82A0A4D9BAS9_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-18B3 family protein