PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010649-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 272aa MW: 31424 Da PI: 9.7925 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.4 | 3.1e-19 | 31 | 122 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffk+ ++l+s+ l++p +f+e++gg+ ++t t+e ++g sW+v+l ++ ++ +++kGW +Fv++n L+egDf++F + g+ SMil_00010649-RA_Salv 31 FFKIY--MSALSSKFLRIPPDFIEKFGGN--IPTTCTIERqPRGVSWQVEL--NRVNDGWFFQKGWPNFVEDNLLREGDFLTFCYLGK 112 67777..77889999***********988..5556666666**********..88888889*************************98 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 s f +vk+f+ SMil_00010649-RA_Salv 113 SLF--YVKIFSP 122 888..9999985 PP | |||||||
2 | B3 | 40.8 | 4e-13 | 180 | 267 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 l++ + s+ +++p +f ++h ++ k+ tl +++ W+v + ++++++++kG +F k+n +k+g +++F+l++ ++ SMil_00010649-RA_Salv 180 LMKTHIK-SRSMCIPTPFWSAHmktI--ITSRKEATLWV-ENKAWNVGV--VYYDNKVLFQKGCAQFFKDNSIKVGTSCTFQLIDPDQ 261 5555555.555***********7532..33344444333.55*******..778888***************************9899 PP E..EEE CS B3 90 felvvk 95 f+++v+ SMil_00010649-RA_Salv 262 FSFRVT 267 966664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.06E-23 | 25 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-22 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.58E-17 | 29 | 121 | No hit | No description |
PROSITE profile | PS50863 | 14.269 | 29 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.6E-17 | 31 | 121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-17 | 31 | 123 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-16 | 172 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-15 | 172 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.23E-12 | 174 | 267 | No hit | No description |
PROSITE profile | PS50863 | 7.613 | 175 | 270 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-9 | 176 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-11 | 180 | 266 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MMKRKRGRPR KIHSNNLDEE IVNGNDNLPE FFKIYMSALS SKFLRIPPDF IEKFGGNIPT 60 TCTIERQPRG VSWQVELNRV NDGWFFQKGW PNFVEDNLLR EGDFLTFCYL GKSLFYVKIF 120 SPNGCEKEGA GSSKLDESSP SVKICADTYE TKRKHWRRIS SRWGSSVAYI NGNPSFSIVL 180 MKTHIKSRSM CIPTPFWSAH MKTIITSRKE ATLWVENKAW NVGVVYYDNK VLFQKGCAQF 240 FKDNSIKVGT SCTFQLIDPD QFSFRVTSRI DD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D9BAS9 | 7e-82 | A0A4D9BAS9_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12633 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 1e-18 | B3 family protein |