PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010624-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 28166.6 Da PI: 6.0343 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.9 | 5.2e-41 | 10 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaCk++rrkC++ C+lapyfpa+qpk f+nvh+lFG+snv+k+l+al +e+redam+s++yeA++r r Pv G+ gvi +l++ql SMil_00010624-RA_Salv 10 ACAACKYQRRKCSPTCPLAPYFPANQPKMFQNVHRLFGVSNVTKTLDALkTKEQREDAMRSIIYEADMRERFPVDGCSGVIAQLTHQL 97 7************************************************55666********************************** PP DUF260 88 eqlkaelallke 99 + ++ el+++++ SMil_00010624-RA_Salv 98 RLARDELDYVRA 109 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.991 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-39 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MTVKGGSTPA CAACKYQRRK CSPTCPLAPY FPANQPKMFQ NVHRLFGVSN VTKTLDALKT 60 KEQREDAMRS IIYEADMRER FPVDGCSGVI AQLTHQLRLA RDELDYVRAT IAACREQAAL 120 AAAKPADCWL DYAPGEAAAA GFLFNDGACE PCGSDTMSSN LSSIQAQMEA FVIHQKRNVS 180 VDFGAQQFNN AAAVFDHDRQ SSYIEPKNEA FESSLDSTLD DAEESGCRRE MRGGAATEHG 240 CRRELRSAAA GFSLTTVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-29 | 2 | 125 | 4 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-29 | 2 | 125 | 4 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085863.1 | 3e-66 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A4D9C4N9 | 2e-64 | A0A4D9C4N9_SALSN; Uncharacterized protein | ||||
STRING | Migut.K01341.1.p | 2e-53 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 6e-40 | LOB domain-containing protein 27 |