PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010610-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 848aa MW: 93175.3 Da PI: 7.3661

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010610-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.8e-18	343	443	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ SMil_00010610-RA_Salv 343 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSR 429 99************************555567778***********99899999999.*******************8 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ e++l+++++++ SMil_00010610-RA_Salv 430 MD-PEGKLLMGFRKA 443 76.888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-29	335	445	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.22E-19	340	442	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.76E-22	341	442	No hit	No description
Pfam	PF02362	6.2E-16	343	443	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.152	343	444	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-20	343	444	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 848 aa Download sequence Send to blast
LFVASTKSSS KAAIYRPIKT QIARAKRNTF LTENLCLEME GGVCMNGICG SSSSVEWKKG 60 WPLRSGGFAT LCHNCGTAYK DLVFCETFHS EETGWRECTS CGKRLHCGCI ASSTLLELLD 120 TGGVNCTGCS KSCPRPYTPL EEKHKACGLS TENGTDRNSE RIVPAQSGDD AKMDCQENLL 180 PSPNANVTSR KLEDELASPE GIGYKLLSSS NQSPVGPSKN YDMFQESKSL HKSLVETNLS 240 ISLSASSNSN TLSGVMAEER QLNTAISSFQ QGCRPRHLLP RVPTILAAGL ETNSSSISQL 300 RVARPPVEGR VKSQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL 360 PKACAEAYFP PISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ 420 AGDTVTFSRM DPEGKLLMGF RKASNSVSVQ KQDSHYPMDM SAFQGDGLIG NAESLPLISG 480 YSGLLQSLKG NGSPSMTLFP KHVYLAQKKN IGAKSKRLLI DGHDSLELRL SWEEVQDLLQ 540 PPPTTKPNTV SVEDHEIEEF DEPPVFGKRS IFVVRLSGCS CSAPDEMDSR ELENLLRMHK 600 DFTKRRALTF PKPVHGQASQ ENVKALTNGA GNTSEPGSSS VATTTRHPRH RPGCSCIVCI 660 QPSSGKGKHK PMCTCNVCMT VKQRFKTLMM RKKKRQSERE AEIAQRNQFA KEEAEVDSVA 720 APQHVQLDNN AKRSESENLL KCQSDGGPCQ ENAENFNGGL DLNCYAAPSS RISMMNLLQK 780 ASLPLDTYLR QNGLTSLVVV SEQQESLTLV IAQASGETTT QAREDTAAQE HEGSNELSEK 840 EQREDDTW

Sequence ? help Back to Top

Protein Sequence Length: 848 aa Download sequence Send to blast

LFVASTKSSS KAAIYRPIKT QIARAKRNTF LTENLCLEME GGVCMNGICG SSSSVEWKKG  60
WPLRSGGFAT LCHNCGTAYK DLVFCETFHS EETGWRECTS CGKRLHCGCI ASSTLLELLD  120
TGGVNCTGCS KSCPRPYTPL EEKHKACGLS TENGTDRNSE RIVPAQSGDD AKMDCQENLL  180
PSPNANVTSR KLEDELASPE GIGYKLLSSS NQSPVGPSKN YDMFQESKSL HKSLVETNLS  240
ISLSASSNSN TLSGVMAEER QLNTAISSFQ QGCRPRHLLP RVPTILAAGL ETNSSSISQL  300
RVARPPVEGR VKSQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL  360
PKACAEAYFP PISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ  420
AGDTVTFSRM DPEGKLLMGF RKASNSVSVQ KQDSHYPMDM SAFQGDGLIG NAESLPLISG  480
YSGLLQSLKG NGSPSMTLFP KHVYLAQKKN IGAKSKRLLI DGHDSLELRL SWEEVQDLLQ  540
PPPTTKPNTV SVEDHEIEEF DEPPVFGKRS IFVVRLSGCS CSAPDEMDSR ELENLLRMHK  600
DFTKRRALTF PKPVHGQASQ ENVKALTNGA GNTSEPGSSS VATTTRHPRH RPGCSCIVCI  660
QPSSGKGKHK PMCTCNVCMT VKQRFKTLMM RKKKRQSERE AEIAQRNQFA KEEAEVDSVA  720
APQHVQLDNN AKRSESENLL KCQSDGGPCQ ENAENFNGGL DLNCYAAPSS RISMMNLLQK  780
ASLPLDTYLR QNGLTSLVVV SEQQESLTLV IAQASGETTT QAREDTAAQE HEGSNELSEK  840
EQREDDTW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	8e-70	321	450	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	681	692	KQRFKTLMMRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095138.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Refseq	XP_020553390.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Refseq	XP_020553391.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A4D8Z0Q2	0.0	A0A4D8Z0Q2_SALSN; Uncharacterized protein
STRING	Migut.J00040.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]