PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010580-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 515aa    MW: 56733 Da    PI: 8.8305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010580-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.41.7e-24209265259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +DgynWrKYGqK+vk+ e +rsYYrCt+++C++kk +e+++  ++++e++Y+++Hnh+
  SMil_00010580-RA_Salv 209 SDGYNWRKYGQKQVKSPEGSRSYYRCTFSDCCAKK-IECCDISNRLIETVYRSHHNHD 265
                            7********************************98.*********************7 PP
2WRKY97.77.4e-31383439359
                            -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er+ ++ ++v+itY+g H+h+
  SMil_00010580-RA_Salv 383 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERAVDNSSAVVITYKGIHDHD 439
                            9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182908.5E-20204267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-21204267IPR003657WRKY domain
SMARTSM007742.7E-23208266IPR003657WRKY domain
PROSITE profilePS5081118.441209267IPR003657WRKY domain
PfamPF031068.2E-17210265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-31366441IPR003657WRKY domain
PROSITE profilePS5081132.524376441IPR003657WRKY domain
SuperFamilySSF1182902.88E-27377441IPR003657WRKY domain
SMARTSM007741.3E-35381440IPR003657WRKY domain
PfamPF031066.7E-24383438IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
LWKRRAFYYL LRVAKARTSH TDSVWESAME GANNRSSDAL REKVSEDSEP SEERGVENRD  60
GKAEKIDEQS RVSSGSTSDY ALGNSSRGES KASQLQTLAS VELPVADFRA DFDDSSDHLS  120
EVPVEYSLQP VPSGEDMKDH VKSVKKIVPK DIGGKSSASA IKSSSSIASS NPPEQKLRPV  180
ENGSNLCIPE QDKQNPKRLS IVPTPRTPSD GYNWRKYGQK QVKSPEGSRS YYRCTFSDCC  240
AKKIECCDIS NRLIETVYRS HHNHDPPQKL NSTRENKPSL LSPPVNGSND PSHLVRHVND  300
PEPSTPSKEH VVALDEKPET KQESSGSDET TVADTKELYG EGLNQRKGMQ KRNSTGEVES  360
LPKPGKKPKY VVHAAGDVGI SGDGYRWRKY GQKMVKGNPH PRNYYRCTSA GCPVRKHIER  420
AVDNSSAVVI TYKGIHDHDT PVPRKRHGPK GGIAVATSPV SLNDMQSKSK LHKTQQTQWS  480
VDKEGELTGE ALVGGDKASE SARTLLSVGF EIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24372441877Probable WRKY transcription factor 4
2lex_A1e-24372441877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231510.0KM823151.1 Salvia miltiorrhiza WRKY protein (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083976.10.0probable WRKY transcription factor 32 isoform X1
SwissprotP595831e-103WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A0D5Y9970.0A0A0D5Y997_SALMI; WRKY protein
STRINGMigut.K00328.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-105WRKY DNA-binding protein 32