PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010500-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WOX

Protein Properties

Length: 263aa MW: 28648.9 Da PI: 6.6061

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010500-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.9	1.1e-15	29	89	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ SMil_00010500-RA_Salv 29 RSRWTPKPEQILILETIFNSgMVNPPKDETVRIRKLLekfgSVADANVFYWFQNRRSRSRR 89 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.5	1.6e-34	28	91	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G + d+NVfyWFQNr++R+r++q SMil_00010500-RA_Salv 28 VRSRWTPKPEQILILETIFNSGMVNPPKDETVRIRKLLEKFGSVADANVFYWFQNRRSRSRRRQ 91 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.499	25	90	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-13	26	97	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-6	27	94	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.2E-9	28	94	IPR009057	Homeodomain-like
Pfam	PF00046	2.4E-13	29	89	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEDPARATGG SRQQHHGGGG GDASEQPVRS RWTPKPEQIL ILETIFNSGM VNPPKDETVR 60 IRKLLEKFGS VADANVFYWF QNRRSRSRRR QRQVQATLAA DQPPPSRRLP AHHYDQHGFA 120 PPAAANFPPN SFSYAMINSA SSSSSSFGLE ANDGGADDSG CGGFGFSPYP GLMHELEQNP 180 IFGAAEAPTS QIQPPEKYAE MMTVFFNGVA TEVGRGPVDI KSMFGGDFAV FHSSGMAMEA 240 NEYGFLVHGL QHGESYFLVP KLP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137070	2e-68	AC137070.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence.
GenBank	AK063262	2e-68	AK063262.1 Oryza sativa Japonica Group cDNA clone:001-113-A08, full insert sequence.
GenBank	AK111000	2e-68	AK111000.1 Oryza sativa Japonica Group cDNA clone:002-174-E11, full insert sequence.
GenBank	AP014959	2e-68	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	2e-68	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069976.1	9e-78	WUSCHEL-related homeobox 11-like
TrEMBL	A0A4D9AFT8	2e-96	A0A4D9AFT8_SALSN; Uncharacterized protein
STRING	XP_006479197.1	9e-61	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	2e-32	WUSCHEL related homeobox 12