PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010353-RA_Salv
Common NameMYB61
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 265aa    MW: 29078.8 Da    PI: 7.4073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010353-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-163378148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  SMil_00010353-RA_Salv 33 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 78
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-211486IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-101439IPR009057Homeodomain-like
PROSITE profilePS500904.1351427IPR017877Myb-like domain
PROSITE profilePS5129423.8882882IPR017930Myb domain
SMARTSM007172.0E-153280IPR001005SANT/Myb domain
PfamPF002491.7E-143378IPR001005SANT/Myb domain
CDDcd001671.59E-113578No hitNo description
Gene3DG3DSA:1.10.10.601.1E-204079IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRPPCCDKI GLLRCSKSCR LRWTNYLRPG IKRGNFTEHE EKMIIHLQAL LGNRWAAIAS  60
YLPQRTDNDI KNYWNTHLRK KLGKIQGHNS ESIENGGGGG KDSESVSKGK WERRLQTDIH  120
MAKQALCEAL SLDKFDSAAL FPTKTAPEMK PAPSTYASSA ENIARLLQNW TKKSPKSMGD  180
VASSSESSAV GLSSSPSEGA MSTATLAGFN SSNSDSVEDQ LEAKFDRNCV ETEMPLSLLE  240
KWLFEDAAAQ GHDGDFMVDC LAGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-18148240108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594150.0KF059415.1 Salvia miltiorrhiza MYB-related transcription factor (MYB61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071639.11e-106myb-related protein 306
SwissprotP813921e-101MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A059PRK00.0A0A059PRK0_SALMI; MYB-related transcription factor
STRINGXP_009594207.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-72myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]