PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010274-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 262aa    MW: 29141.3 Da    PI: 6.8733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010274-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-1377124355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+h+e+ErrRR+riN  +e Lr l+P++     +K++Ka+ L +++  Ik+L+
  SMil_00010274-RA_Salv  77 RSHSEAERRRRERINAHLESLRGLVPNN-----EKMDKATLLAEVISQIKQLR 124
                            68*************************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.58374123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-1477131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1077123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1477133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1380129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMHCENQYGF NIESDGGEFV NQLLHNSSKN VENRSCLLMP VKQSLVLDGE KGELVKASGR  60
MGKRIGVSET KTVEALRSHS EAERRRRERI NAHLESLRGL VPNNEKMDKA TLLAEVISQI  120
KQLRTTASQA SEGLHIPIDT DELKVETLEN HTGDGMFLLR ASLCCEHLPD LLSDVRQVIN  180
SLPIRVLKSE ISTLGSRVKI AFLITTVEGN DSVREFVVGS VRAALSNVLE KVSALAESAE  240
QLFIPRKRQR VSCLDSSSYL FE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575550.0KP257555.1 Salvia miltiorrhiza clone 123 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086002.11e-100transcription factor bHLH30-like
TrEMBLA0A0H3YC720.0A0A0H3YC72_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.H01448.1.p1e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-28bHLH family protein