PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010264-RA_Salv
Common NameMYB35
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 317aa    MW: 35742.3 Da    PI: 7.6471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010264-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171966148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  SMil_00010264-RA_Salv 19 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 66
                           79******************************99************97 PP
2Myb_DNA-binding45.61.6e-1472117148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+ E+  ++++ ++lG++ W++Ia +++  Rt++++k++w+++l
  SMil_00010264-RA_Salv  72 RGNFTPHEEGMIIHLQALLGNK-WAAIATYLP-QRTDNDIKNYWNTHL 117
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-231069IPR009057Homeodomain-like
PROSITE profilePS5129424.5861470IPR017930Myb domain
SuperFamilySSF466892.02E-3016113IPR009057Homeodomain-like
SMARTSM007172.0E-141868IPR001005SANT/Myb domain
PfamPF002493.2E-161966IPR001005SANT/Myb domain
CDDcd001672.23E-112166No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2470122IPR009057Homeodomain-like
PROSITE profilePS5129419.01871121IPR017930Myb domain
SMARTSM007178.4E-1371119IPR001005SANT/Myb domain
PfamPF002496.9E-1372117IPR001005SANT/Myb domain
CDDcd001675.39E-974117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
LRNDKMGRPP CCDKVGIKKG PWTPEEDIIL VSYIQEHGPG NWRAVPTNTG LLRCSKSCRL  60
RWTNYLRPGI KRGNFTPHEE GMIIHLQALL GNKWAAIATY LPQRTDNDIK NYWNTHLKKK  120
LKKFQSGLEP QMAGDPTAFH QFASKSYGES SKSESSLRIG ENSSVYASSA ENISRLLEGW  180
MRSSPLQPNT NQINGISNHD NKFYGNFGKI IPNFENSDAS ASLIQCYRPQ KMEHVMPSDH  240
ELEGMLVFDH HHHHKSSCDS SQKGSESSGL IDHDKACFEH EQKAKIDGNP PLSFLEKWLL  300
DESAAQVEGA MELPPIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-23191214105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593890.0KF059389.1 Salvia miltiorrhiza MYB-related transcription factor (MYB35) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069952.11e-153myb-related protein 306
SwissprotB3VTV71e-122MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A059PRS10.0A0A059PRS1_SALMI; MYB-related transcription factor
STRINGcassava4.1_031668m1e-129(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-98myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]