PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010206-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18167.9 Da PI: 11.2961 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 71.3 | 1.9e-22 | 42 | 100 | 1 | 59 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredams 59 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll+a p+e+ ++a++ SMil_00010206-RA_Salv 42 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQAFPNEHGHRAVK 100 7************************************************9999777664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.622 | 41 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.2E-22 | 42 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MAYSGNSSAN AAAAEGSISA VSPTSSSSPP SSPPSPPVIL SPCAACKILR RRCVEKCVLA 60 PYFPPTEPLK FTIAHRVFGA SNIIKLLQAF PNEHGHRAVK GASLSGHGIV LLREASPNRR 120 CNTGILAYWH RAAREASLSG HGHRAVRKAL LSGHGIVLLR EASPNRRKHQ T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-18 | 34 | 99 | 3 | 68 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-18 | 34 | 99 | 3 | 68 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Si024430m | 6e-32 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-28 | LOB domain-containing protein 1 |