PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010194-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 781aa MW: 86582.7 Da PI: 6.5867

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010194-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.1	2e-29	468	518	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ SMil_00010194-RA_Salv 468 EKNISLQVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 518 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.938	457	538	IPR003035	RWP-RK domain
Pfam	PF02042	9.9E-25	470	518	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.41E-20	681	763	No hit	No description
PROSITE profile	PS51745	22.654	682	765	IPR000270	PB1 domain
SMART	SM00666	2.3E-24	682	765	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.8E-21	683	762	No hit	No description
CDD	cd06407	4.68E-39	683	764	No hit	No description
Pfam	PF00564	3.1E-16	683	764	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MGDDASFKPK TMLEDRDSTT NLDFSAMDDL LYDGFWLQTS DESNFWQPAA TDLNPSFLFP 60 CSETTQKPNP PFTFPGMDDL SGNGASIPSV SLGQSTDFLF EETEVSKRVW VAPTRNPTRS 120 VSVRKKLVQA VNHLKDSIRE SDVLVQIWVP VKRGGKQVLT TNNQPFSLNP NCKNLAEYRD 180 VSRNYHFAAD EDSKESTGLP GRVFLKKLPD WTPDVQYFKR EEYPRKNHAQ QCDVRGSLAL 240 PVFERGSGKC LGVVESSPPA VDLKSSDILQ QGPPNIEDCN ESYQSVLMEI RNVLRCVCDT 300 HRLPLAQTWA PCVQQGKGGC RHSDENYTHC VSTLDSACYV AEEEVAGFHE ACSEYHLLKG 360 EGIAGKAFLT NQPCFSPDIT EFSKTEYPLA HHARVFREPE DQRQMLDSLS SVVERTCHSL 420 RVWDKSGAPA FLEQDSGSKD GSGSFFFSSG PLPAGAKIST EKRRTKTEKN ISLQVLRQYF 480 AGSLKDAAKN IGVCPTTLKR ICRQHGITRW PSRKIKKVGH SLRKLQLVID SVQGTEGSIQ 540 LSSFYNNFPE LSSPNAPETS HLPTSTVGGE LQQGNNQPEG TLLSPATTSS GSHSSSSSYC 600 CSTGVKQSSL PVNGSSSGDA LSAQQNEGML KRARSDAELH QLSQEDTKLL VRSYSQKIFS 660 DHASNEAPPV PKTSSKAQDV GYFRVKAALG EEKIRLTLQP HWGFRELQQE VLRRFNIDNG 720 SRVDLKYLDD DSEWVLLTCD ADLEECKDIH TSLKSRTIRI SLNQAYYHPS LGSSFGSNGP 780 F

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MGDDASFKPK TMLEDRDSTT NLDFSAMDDL LYDGFWLQTS DESNFWQPAA TDLNPSFLFP  60
CSETTQKPNP PFTFPGMDDL SGNGASIPSV SLGQSTDFLF EETEVSKRVW VAPTRNPTRS  120
VSVRKKLVQA VNHLKDSIRE SDVLVQIWVP VKRGGKQVLT TNNQPFSLNP NCKNLAEYRD  180
VSRNYHFAAD EDSKESTGLP GRVFLKKLPD WTPDVQYFKR EEYPRKNHAQ QCDVRGSLAL  240
PVFERGSGKC LGVVESSPPA VDLKSSDILQ QGPPNIEDCN ESYQSVLMEI RNVLRCVCDT  300
HRLPLAQTWA PCVQQGKGGC RHSDENYTHC VSTLDSACYV AEEEVAGFHE ACSEYHLLKG  360
EGIAGKAFLT NQPCFSPDIT EFSKTEYPLA HHARVFREPE DQRQMLDSLS SVVERTCHSL  420
RVWDKSGAPA FLEQDSGSKD GSGSFFFSSG PLPAGAKIST EKRRTKTEKN ISLQVLRQYF  480
AGSLKDAAKN IGVCPTTLKR ICRQHGITRW PSRKIKKVGH SLRKLQLVID SVQGTEGSIQ  540
LSSFYNNFPE LSSPNAPETS HLPTSTVGGE LQQGNNQPEG TLLSPATTSS GSHSSSSSYC  600
CSTGVKQSSL PVNGSSSGDA LSAQQNEGML KRARSDAELH QLSQEDTKLL VRSYSQKIFS  660
DHASNEAPPV PKTSSKAQDV GYFRVKAALG EEKIRLTLQP HWGFRELQQE VLRRFNIDNG  720
SRVDLKYLDD DSEWVLLTCD ADLEECKDIH TSLKSRTIRI SLNQAYYHPS LGSSFGSNGP  780
F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022873314.1	0.0	protein NLP2-like isoform X1
Refseq	XP_022873316.1	0.0	protein NLP2-like isoform X1
Refseq	XP_022873317.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A2Z7BUC4	0.0	A0A2Z7BUC4_9LAMI; Uncharacterized protein
STRING	XP_010692542.1	0.0	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	1e-126	Nin-like family protein