PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010191-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GeBP

Protein Properties

Length: 413aa MW: 45381.7 Da PI: 5.1808

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010191-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	110.6	1.1e-34	92	193	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 klfqrlw++eDei lLqG++d+++++ + ++d++afy++++++ +++++k+qlveK+rrLKkK+++ +k +gke +f+++ SMil_00010191-RA_Salv 92 KLFQRLWTDEDEIELLQGFLDYTTQRCGphsssQHHHDTTAFYDQIRSKFQLDFNKNQLVEKLRRLKKKYRNVISKFGTGKEYTFKSP 179 579*****************999854465535556*********************************************** PP DUF573 84 hdqkifelskkiWg 97 h+q +fe+s+kiWg SMil_00010191-RA_Salv 180 HEQATFEISSKIWG 193 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.7E-33	94	193	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MASADEPASA AAPLIFNEDE DLLDDDDDDE SFDHYDDDSA SSAPVAVDRP PPPVSAAQVT 60 IAVPGLPDPH HQQQIQPEIA KKPPPPPDES RKLFQRLWTD EDEIELLQGF LDYTTQRCGP 120 HSSSQHHHDT TAFYDQIRSK FQLDFNKNQL VEKLRRLKKK YRNVISKFGT GKEYTFKSPH 180 EQATFEISSK IWGNAAVNGA AAYRAPPVPI DEDEDGINNP NFNNFVDCQS PNPNGIDINA 240 KTPRSRKRNR AGAVKLEEKQ HNVAPVNISN AQPVSAVSPM AAPVMGMGIT GSLSGVIEET 300 VKSCLSPIFK ELLSNSMSPN LNSNGSCCGN GFGLGRSPIP FCFGTAMGAD KASNERWRKQ 360 QILELEVFSK RLELVQDQIR EQLQELRASS STVYHGGCSL SLSGKWILLV SVG

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MASADEPASA AAPLIFNEDE DLLDDDDDDE SFDHYDDDSA SSAPVAVDRP PPPVSAAQVT  60
IAVPGLPDPH HQQQIQPEIA KKPPPPPDES RKLFQRLWTD EDEIELLQGF LDYTTQRCGP  120
HSSSQHHHDT TAFYDQIRSK FQLDFNKNQL VEKLRRLKKK YRNVISKFGT GKEYTFKSPH  180
EQATFEISSK IWGNAAVNGA AAYRAPPVPI DEDEDGINNP NFNNFVDCQS PNPNGIDINA  240
KTPRSRKRNR AGAVKLEEKQ HNVAPVNISN AQPVSAVSPM AAPVMGMGIT GSLSGVIEET  300
VKSCLSPIFK ELLSNSMSPN LNSNGSCCGN GFGLGRSPIP FCFGTAMGAD KASNERWRKQ  360
QILELEVFSK RLELVQDQIR EQLQELRASS STVYHGGCSL SLSGKWILLV SVG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552957.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A4D9A5Q9	0.0	A0A4D9A5Q9_SALSN; Uncharacterized protein
STRING	Migut.N01941.1.p	1e-163	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	3e-69	DNA-binding storekeeper protein-related transcriptional regulator