PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010170-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 24093.6 Da PI: 5.3799 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8e-12 | 74 | 116 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ a+iL +++Y+++L SMil_00010170-RA_Salv 74 MAERRRRKRLNDRLSMLRSVVPRiS------KMDRASILGDTIDYMREL 116 89*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.35E-6 | 64 | 116 | No hit | No description |
PROSITE profile | PS50888 | 15.637 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-15 | 69 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-13 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 73 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-15 | 74 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.59E-5 | 155 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MELYRNDEHG FLEELLEMES FTNQESLPSL ACIPSYQLSP PDFSFIQTLP YDFQNPEPHS 60 LNTSPQKPAS KNLMAERRRR KRLNDRLSML RSVVPRISKM DRASILGDTI DYMRELLGRI 120 NNLQEETHLF KDVKPNEILL RNSPKFQVER GNPDTRIEIC CGGKPGLLLS TVTTLEALGV 180 DIQQCVISCF NDFALQASCS EVSRFFVFFV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 82 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257550 | 0.0 | KP257550.1 Salvia miltiorrhiza clone 118 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028083994.1 | 5e-68 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 2e-55 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0H3YC70 | 1e-153 | A0A0H3YC70_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | EMJ28091 | 7e-68 | (Prunus persica) | ||||
STRING | XP_010104558.1 | 3e-66 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-57 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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