PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010114-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 22574.9 Da PI: 9.0908 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.5 | 9.6e-43 | 56 | 154 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ SMil_00010114-RA_Salv 56 PCAACKFLRRKCLSGCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVI 143 7*************************************************************************************** PP DUF260 89 qlkaelallke 99 ql++el+++++ SMil_00010114-RA_Salv 144 QLQKELDATNA 154 ******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.04 | 55 | 156 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-42 | 56 | 153 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MNEVIFKSCI PIYVLHIHLK QITPPTIVRI TIDIGKMKKE YIYRMASSSS TYSNPPCAAC 60 KFLRRKCLSG CIFAPYFPPE EPTKFANVHK IFGASNVSKL LNEILPHQRE DAVNSLAYEA 120 EARLKDPVYG CVGAISVLQR QVIQLQKELD ATNADLMRYT NQNYGQQRRN MGYGSGVGSY 180 NPNPGYSVAY SYGENPAAHG TN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-63 | 46 | 165 | 1 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-63 | 46 | 165 | 1 | 120 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097516.1 | 5e-87 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 7e-68 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A4D9APX9 | 1e-88 | A0A4D9APX9_SALSN; Uncharacterized protein | ||||
STRING | XP_009597524.1 | 1e-76 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-70 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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