PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009897-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 628aa    MW: 68605.7 Da    PI: 9.1132
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009897-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73.1e-11528125
                           --S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                           +k+e+C++f+r G C+yG rCkF H
  SMil_00009897-RA_Salv  5 PKEEICKYFQR-GSCRYGTRCKFLH 28
                           79*********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-7430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.225431IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8528IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-7529IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-8628IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
LIMPPKEEIC KYFQRGSCRY GTRCKFLHRT PQQSQTNPFG FGAQTSGTPT QHPNPQQPIR  60
NPFGFGNQNN SHSRGGDGFG SKPSQVKPFE NKWSRFSNIN NSSAPASRQP NNQPPAANHT  120
CTDPESCKRV ILEDLENEKP LWKLTCYGHR KDGPCDVVGD VSYDELRALA YDDAKHGKSL  180
VSIVERERNM LNSKLIEFQN LVQKPYTVSS APTPSSQNLF GGGSTNAPAV NNGFSPQVSS  240
FSQLSGSLNT RPAAAPSFSF GQSNVFQNNS QPSGFQTNNS PFNTSGTFPS QPQHSIQSFS  300
SFGTTSSNNG AISAQRNPFS TPVSLSQTGN GDYKQLNLFT NDPNSAFSAI GQTTTSTQLI  360
NNIANVDGSI WSKAEWTVGE IFVVDMKNKI ELGFGKWLFT IMVNQLMDIA APVMNPILEF  420
GNPRRRASID LHSVELIERS FMSDVNYKMA SESKEQPPLS SSSPAGCHPH RCRRRSPLRP  480
PPPFAHSAVA ASLPLSRATD LVISLSLPLT VASLGDLGDS KLAAQMREVS GQDLVFDFWF  540
ACAAASRLFG RRRLSSSLSP SIHLHSVWGQ DLVFEWILKG SGWRRWWLLA TVVVVVGRFE  600
GQRGWLMRET RGTEGDEGGG DFAGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078165.11e-151zinc finger CCCH domain-containing protein 46 isoform X2
TrEMBLA0A4D8Y4Y71e-169A0A4D8Y4Y7_SALSN; Nucleoporin-like protein 2
STRINGXP_008224558.11e-102(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.23e-59C3H family protein