PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009845-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRF
Protein Properties Length: 331aa    MW: 35850.6 Da    PI: 8.5581
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009845-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC771.9e-2486130145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  SMil_00009845-RA_Salv  86 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 130
                            79****************************************986 PP
2QLQ60.74.1e-212559236
                    QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                           +FT+ Q+ +L++Q+++yKy++a++PvPp+L+ +i+
  SMil_00009845-RA_Salv 25 PFTDVQWKELEQQAMIYKYMVAGLPVPPDLVTPIR 59
                           9********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-112460IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-152559IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1522560IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.83186130IPR014977WRC domain
PfamPF088796.0E-2187129IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSEKAPITVV GIGAELGYGG YRAPPFTDVQ WKELEQQAMI YKYMVAGLPV PPDLVTPIRH  60
SFEGLYAHLF NHPALGYCSY YGKKFDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMHRG  120
RNRSRKPVES QSTSQSVLTA VPHSSTGGGI NRGSSQQMPL YSGANADVSS VASNATKLQM  180
GPISYGIGSS REFSFSQEGS GRVGTLGLGP SAGSGTWGLM PSQVSSNSLF KQGSDSRILG  240
SSSAQQYTPH AYEPVSSKQQ HGLFGSDISS PTTLKQEHLF FSEWPSTKES WSNLDNDGTN  300
ENTFSSTQLS MSTPRASSDF TSGTAYSPND G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553035.11e-148growth-regulating factor 4-like isoform X3
TrEMBLA0A4D9A6550.0A0A4D9A655_SALSN; Uncharacterized protein
TrEMBLA0A4D9AJ990.0A0A4D9AJ99_SALSN; Uncharacterized protein
STRINGSolyc08g075950.1.11e-125(Solanum lycopersicum)
STRINGXP_009605688.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-46growth-regulating factor 5