PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009782-RA_Salv
Common NameMYB17
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 428aa    MW: 48452.3 Da    PI: 6.3564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009782-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-18192238148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g WT+eEd ll+++v+++G + W+ Ia+++  gR +kqc++rw+++l
  SMil_00009782-RA_Salv 192 KGQWTAEEDRLLIHLVEKYGLRKWSNIAQMLK-GRIGKQCRERWHNHL 238
                            799****************************9.*************97 PP
2Myb_DNA-binding51.72.1e-16244286145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            ++ WT eEd +l+++++q G++ W+ Ia+ ++ gRt++ +k++w+
  SMil_00009782-RA_Salv 244 KDVWTLEEDRILIEVHAQVGNK-WAEIAKSLP-GRTENTIKNHWN 286
                            578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.548187242IPR017930Myb domain
SMARTSM007171.4E-17191240IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-31192285IPR009057Homeodomain-like
PfamPF002492.7E-17192238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-28193245IPR009057Homeodomain-like
CDDcd001671.58E-16195238No hitNo description
PROSITE profilePS5129419.603243293IPR017930Myb domain
SMARTSM007171.2E-15243291IPR001005SANT/Myb domain
PfamPF002499.2E-15244286IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21246292IPR009057Homeodomain-like
CDDcd001675.77E-12247289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
METNKNTCSA ISLPTGFSNI DLKREILDDD FGMDNLSSSK GYLQDFQDLE QLPMTASYCN  60
WDTGIQANGF DPFASFPHGS VTDFSLYRFK PYEENGSMLS AIQDFQAGGF LNFPDRKGSS  120
MVTKTASEYN SKPLCFVVPD ESSCVTGDNF GYHNKDGSKR NKNIVNGSNS NISESLSTKK  180
CVRAPKKSKS AKGQWTAEED RLLIHLVEKY GLRKWSNIAQ MLKGRIGKQC RERWHNHLRP  240
DIKKDVWTLE EDRILIEVHA QVGNKWAEIA KSLPGRTENT IKNHWNATKR RQFTTRKCRT  300
KWPRPSSLLQ NYIKSLNFEK GSSKRSKNIQ PPATTDHGIL SNSSITTPQE MDIEFSLDDH  360
MLQEYGIDEV QDLTFDNDSL FTESSIDMPV GLPYEFDDGQ CFDAGFPLDI PPLMQCGVKQ  420
ELDFHGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-461922924104C-Myb DNA-Binding Domain
1msf_C6e-461922924104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593710.0KF059371.1 Salvia miltiorrhiza MYB-related transcription factor (MYB17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101317.11e-161transcription factor MYB98-like
TrEMBLA0A059PRP60.0A0A059PRP6_SALMI; MYB-related transcription factor
STRINGMigut.D01939.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-80myb domain protein 98
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]