PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009775-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 405aa    MW: 46277.8 Da    PI: 9.4783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009775-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-17178223147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  SMil_00009775-RA_Salv 178 RGHWRPHEDARLKELVAQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 223
                            899*****************************.***********996 PP
2Myb_DNA-binding56.94.7e-18230273146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  SMil_00009775-RA_Salv 230 RRAFSEEEEERLLAAHTMYGNK-WAMIARLFP-GRTDNAVKNHWHV 273
                            678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.53173224IPR017930Myb domain
SMARTSM007178.0E-14177226IPR001005SANT/Myb domain
PfamPF002492.2E-15178223IPR001005SANT/Myb domain
SuperFamilySSF466891.91E-27178271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-25179231IPR009057Homeodomain-like
CDDcd001671.35E-12181222No hitNo description
PROSITE profilePS5129426.779225279IPR017930Myb domain
SMARTSM007172.6E-14229277IPR001005SANT/Myb domain
PfamPF002497.6E-14230272IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-20232278IPR009057Homeodomain-like
CDDcd001671.14E-6241272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
LDGCGGFEFL CVSSLLLVSK RKYFCVSFHV SFFIFNLTVV CFLRLFVFLF SLSPIVLSYH  60
FSFSRSPRKH FSLYLNFSHL RILNFSSFHI QVPIFLGFSV SHTQKMNLQN LINSCGSTRK  120
APSAMQDLTF LPPHLPSAPS MEQKINLRNP WQIDEAKKLK SEGHEFEEIA RKSKLCARGH  180
WRPHEDARLK ELVAQFGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFSEEEEER  240
LLAAHTMYGN KWAMIARLFP GRTDNAVKNH WHVIMARKHR EHNSVYRRRK PSFPNLQIPN  300
TCSDQSTVDE SAASTCTDLS LTPSSAKHPH FLTRFSPVHH MLNLQNGVNQ ICANVDHQSD  360
SNSEVSASES VANNRANLYG CGEDEKGKFE KGNMAFIDFL GVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-331782787107B-MYB
1mse_C7e-331782784104C-Myb DNA-Binding Domain
1msf_C7e-331782784104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594240.0KF059424.1 Salvia miltiorrhiza MYB-related transcription factor (MYB70) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069977.11e-124transcription factor MYB56
TrEMBLA0A059PRU60.0A0A059PRU6_SALMI; MYB-related transcription factor
STRINGXP_009587330.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.12e-70myb domain protein 56