PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009775-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 405aa MW: 46277.8 Da PI: 9.4783 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.6e-17 | 178 | 223 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ SMil_00009775-RA_Salv 178 RGHWRPHEDARLKELVAQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 223 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.7e-18 | 230 | 273 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ SMil_00009775-RA_Salv 230 RRAFSEEEEERLLAAHTMYGNK-WAMIARLFP-GRTDNAVKNHWHV 273 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.53 | 173 | 224 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-14 | 177 | 226 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 178 | 223 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.91E-27 | 178 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 179 | 231 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-12 | 181 | 222 | No hit | No description |
PROSITE profile | PS51294 | 26.779 | 225 | 279 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-14 | 229 | 277 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 230 | 272 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 232 | 278 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-6 | 241 | 272 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
LDGCGGFEFL CVSSLLLVSK RKYFCVSFHV SFFIFNLTVV CFLRLFVFLF SLSPIVLSYH 60 FSFSRSPRKH FSLYLNFSHL RILNFSSFHI QVPIFLGFSV SHTQKMNLQN LINSCGSTRK 120 APSAMQDLTF LPPHLPSAPS MEQKINLRNP WQIDEAKKLK SEGHEFEEIA RKSKLCARGH 180 WRPHEDARLK ELVAQFGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFSEEEEER 240 LLAAHTMYGN KWAMIARLFP GRTDNAVKNH WHVIMARKHR EHNSVYRRRK PSFPNLQIPN 300 TCSDQSTVDE SAASTCTDLS LTPSSAKHPH FLTRFSPVHH MLNLQNGVNQ ICANVDHQSD 360 SNSEVSASES VANNRANLYG CGEDEKGKFE KGNMAFIDFL GVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-33 | 178 | 278 | 7 | 107 | B-MYB |
1mse_C | 7e-33 | 178 | 278 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-33 | 178 | 278 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00516 | DAP | Transfer from AT5G17800 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059424 | 0.0 | KF059424.1 Salvia miltiorrhiza MYB-related transcription factor (MYB70) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069977.1 | 1e-124 | transcription factor MYB56 | ||||
TrEMBL | A0A059PRU6 | 0.0 | A0A059PRU6_SALMI; MYB-related transcription factor | ||||
STRING | XP_009587330.1 | 1e-110 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 2e-70 | myb domain protein 56 |