PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009763-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19279 Da PI: 5.2077 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.9 | 6.3e-42 | 31 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r+da+ss+vyeA+ar+r+PvyG++g i +lq+q++ SMil_00009763-RA_Salv 31 PCAACKILRRRCVEKCVLAPYFPPHDPLKFTTAHRVFGASNIIKFLQELPESQRDDAVSSMVYEANARLREPVYGCAGAICQLQKQVN 118 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 +l+++la++++e SMil_00009763-RA_Salv 119 ELHEQLAKAQAE 130 ********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.011 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-42 | 31 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MEGSDITATS PSSSSSPPPP PPPQSAVVLS PCAACKILRR RCVEKCVLAP YFPPHDPLKF 60 TTAHRVFGAS NIIKFLQELP ESQRDDAVSS MVYEANARLR EPVYGCAGAI CQLQKQVNEL 120 HEQLAKAQAE LVNVQCQNAN LMAIICMEMS SQNNLAETTS FCDEGNLGFS CEHPLWA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 30 | 136 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 30 | 136 | 10 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090094.1 | 1e-83 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 6e-67 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A4D9BY34 | 2e-88 | A0A4D9BY34_SALSN; Uncharacterized protein | ||||
STRING | POPTR_0008s04350.1 | 9e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-69 | LOB domain-containing protein 1 |