PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009758-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 232aa MW: 24990.9 Da PI: 6.1434 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.4e-09 | 31 | 52 | 23 | 45 |
-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45 +W+ Ia++++ gRt++++k++w+ SMil_00009758-RA_Salv 31 RWAQIAKHLP-GRTDNEVKNFWN 52 5*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.18E-8 | 27 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.0E-7 | 30 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-12 | 30 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.40E-7 | 31 | 52 | No hit | No description |
PROSITE profile | PS50090 | 6.528 | 31 | 55 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRNSSTTSPP TAMAAGALSQ DSQVPLSLSH RWAQIAKHLP GRTDNEVKNF WNSSIKKKIM 60 AHHNMSSSAL ISSSNLQHPN LIINNNLIIP NNPQIDQIII PNSQMEQLGF QIDPNLTTYA 120 PNLALIHHTS APNNSLDSSV FDLQSWSSQA LKQDNGAVLG YDGGYDQDSA LLDALMPELA 180 EMAKGLEFGV SANAAEPPQR AALPSSPPEL RRPPSSPPPS SPSRRSFGEG VD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059521 | 1e-109 | KF059521.1 Salvia miltiorrhiza MYB-related transcription factor (MYB57) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072535.1 | 1e-30 | transcription factor MYB39 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15896 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.1 | 3e-15 | myb domain protein 26 |