PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009629-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 231aa    MW: 24274.1 Da    PI: 5.7378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009629-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-1956106155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  SMil_00009629-RA_Salv  56 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 106
                            68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1356106IPR001471AP2/ERF domain
PROSITE profilePS5103223.19657114IPR001471AP2/ERF domain
SMARTSM003801.9E-3557120IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2157115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-3257115IPR001471AP2/ERF domain
CDDcd000181.23E-2958116No hitNo description
PRINTSPR003672.3E-105869IPR001471AP2/ERF domain
PRINTSPR003672.3E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDAAKHTASS ENCGDASLFS FPPSTSALSQ SAAAPKQKRN REAATAAPAG MSSKHPVYRG  60
VRMRNWGKWV SEIREPRKKS RIWLGTFPTP EMAARAHDVA ALSIKGAAAT LNFPELAAAL  120
PRPASLSPRD VQAAAAKAAA MENFAVLSPP SSSSACSPSS SSSVDNLSAA SAELSEIVEL  180
PSLGSCFDAV EPRNDFVYVD YAAALEGWLD APPQWSADDG GVSGLFSLWD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1950115773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022868204.17e-73ethylene-responsive transcription factor TINY-like
SwissprotQ391275e-60TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A4D8YE204e-98A0A4D8YE20_SALSN; EREBP-like factor
STRINGMigut.A00206.1.p1e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.17e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]