PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00009565-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 27122.7 Da PI: 6.6125 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.3 | 4.9e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C ++C+l+p++ p++q++++ +++k++G++ +++l+k+ p + r+++++sl+yeA+ r+ Pv+G+vg++ ++ SMil_00009565-RA_Salv 4 SCNGCRVLRKGCIENCTLRPCLewiesPESQANATLFLAKFYGRAGLINLIKSGPSHLRPEIFRSLLYEACGRIISPVHGSVGLMCSG 91 6*************************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 + +q+++e++l+++ SMil_00009565-RA_Salv 92 DWPRCQAAVEAVLRGA 107 *********9998766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.218 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCIENCT LRPCLEWIES PESQANATLF LAKFYGRAGL INLIKSGPSH 60 LRPEIFRSLL YEACGRIISP VHGSVGLMCS GDWPRCQAAV EAVLRGAPLM NEDDSASGSV 120 MPLQGCDIRH LSKDSAAACH RRGRARNRSK RSAETHANSF AAELMSESEA KFTITGWDDS 180 GEDRKGFSEE LKRARSHDSY SVETVEPALV NRSHAIKPEL ELGEIALELT LGGPNSVFGV 240 IEISDTEN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 145 | 150 | RNRSKR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070804.1 | 1e-114 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 1e-66 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2G9HYG4 | 1e-117 | A0A2G9HYG4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00341.1.p | 1e-103 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-67 | LOB domain-containing protein 41 |