PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009551-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 185aa    MW: 20153.6 Da    PI: 6.2664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009551-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-193685255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            ykGVr++  +g+WvAeIr+p   + r  r++lg+f+t ++Aa a++aa++kl+g
  SMil_00009551-RA_Salv 36 TYKGVRQRT-WGKWVAEIREP---N-RgSRVWLGTFDTSYDAAVAYDAAARKLYG 85
                           69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-183595No hitNo description
Gene3DG3DSA:3.30.730.101.0E-303694IPR001471AP2/ERF domain
PROSITE profilePS5103222.0233693IPR001471AP2/ERF domain
PfamPF008479.0E-133685IPR001471AP2/ERF domain
SMARTSM003809.6E-363699IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-213694IPR016177DNA-binding domain
PRINTSPR003671.3E-93748IPR001471AP2/ERF domain
PRINTSPR003671.3E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLTAAGEEKR ARKIAQASSR KGCMRGKGGP ENAACTYKGV RQRTWGKWVA EIREPNRGSR  60
VWLGTFDTSY DAAVAYDAAA RKLYGPDAKL NLPHLYEEMP PHQPPQLPAE ATSGGYYPAP  120
ADCGEYVSGC GILKNLDVSL PEVDDSYLWA EAAKGTSFRI VEEEGAFATN LDGNGVPFPW  180
FPHSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-173793663ATERF1
3gcc_A6e-173793663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083628.16e-88dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ23e-51DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A4D9A0H48e-94A0A4D9A0H4_SALSN; Uncharacterized protein
STRINGMigut.C00778.1.p5e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.17e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]