PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009491-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 265aa    MW: 28332.6 Da    PI: 9.829
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009491-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.7e-223380249
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           +ien++n qvtfskRr+g++KKA+ELS+LC+ae av++fs+ +k + +
  SMil_00009491-RA_Salv 33 KIENETNLQVTFSKRRAGVFKKASELSTLCGAESAVVVFSPGNKPHSF 80
                           79***************************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-312483IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.1652484IPR002100Transcription factor, MADS-box
CDDcd002652.45E-342598No hitNo description
SuperFamilySSF554551.05E-252597IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-182646IPR002100Transcription factor, MADS-box
PfamPF003191.1E-243380IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-184661IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-186182IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MHPTTAATTQ ANPTLRKASK KKGKGRQKIT MAKIENETNL QVTFSKRRAG VFKKASELST  60
LCGAESAVVV FSPGNKPHSF GHPNVETVAN RFLHASGGAP SRSNAADQLI MAHSEAAMQQ  120
RNQELVGTEA ELERERQRKK ELDSLPAPPK LDELDYEQLD RLRKSVMGFK REFEAKVKKG  180
AAAASSSVPA AYGYGGGSGS AATYGYTVHY PPAGDAMLPY NNYGNPASVV QYDAATGTAD  240
ADADANADAA PDTNKFRGFG RHPGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088150.11e-69agamous-like MADS-box protein AGL18
TrEMBLA0A4D8Y4S66e-80A0A4D8Y4S6_SALSN; MADS-box transcription factor, plant
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-28AGAMOUS-like 62