PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009482-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

ERF

Protein Properties

Length: 181aa MW: 20210.6 Da PI: 6.7719

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009482-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.6	1.3e-17	93	143	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k r++lg+++t +Aa+a++ a+ k++g SMil_00009482-RA_Salv 93 RYRGVRRRP-WGKYAAEIRDP---ArKGSRVWLGTYDTDVDAARAYDCAAFKMRG 143 7******.******8...4445******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	7.19E-23	93	152	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.8E-31	93	151	IPR001471	AP2/ERF domain
Pfam	PF00847	8.0E-13	93	143	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.777	93	151	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-35	93	157	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-13	94	105	IPR001471	AP2/ERF domain
CDD	cd00018	3.12E-23	101	151	No hit	No description
PRINTS	PR00367	4.5E-13	133	153	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:1902074	Biological Process	response to salt
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MTTSDASLTL ELIRQHLLED ADSFFSNVTT LCFSDVYGDE LNALPEIDSP SSGSDLNAVG 60 PDDFETKPQI SSADDDLSPV KPEPEHWSGG GRRYRGVRRR PWGKYAAEIR DPARKGSRVW 120 LGTYDTDVDA ARAYDCAAFK MRGRKAILNF PFDAGKTSPP PNAGRKRRRE RMPARLCEMH 180 C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-26	91	152	3	64	ATERF1
3gcc_A	2e-26	91	152	3	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	168	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101099.1	1e-71	ethylene-responsive transcription factor ERF107
Swissprot	Q9LY05	2e-42	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	A0A4D9BQX5	1e-63	A0A4D9BQX5_SALSN; EREBP-like factor
STRING	Migut.F00526.1.p	2e-57	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	2e-37	ERF family protein

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]