PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009455-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 255aa MW: 28755.9 Da PI: 9.8533

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009455-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.6	2.2e-13	16	100	10	97
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 ++ ++ ++lp + ++++++ +s +l++++g +W+vk++ r +g +++++GW+eF+++n + D++v++++ + ++f+ +v v SMil_00009455-RA_Salv 16 AGFKKKMMLPSVYYKKIKQE--KSEWAILKTPKG-KWRVKVC-RDDDGDIFFKNGWSEFADENAFNNHDSLVLEHTCNlMCFNVNVNV 99 4445569*****999755..555688888777.6*3.555556*******************************999987 PP E CS B3 97 f 97 SMil_00009455-RA_Salv 100 A 100 6 PP
2	B3	50	5.5e-16	141	230	1	87
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvF 82 ff + ++ + +++ +++ +p + a+++++ ++e ++l+d+ g++W +kl++ ++k +r ++t GW +F an+Lk+gD++ F SMil_00009455-RA_Salv 141 FFRKRMTDYCGTKgAMVHIPLELARSNNLTSKE--SVSLMDPGGKEWAFKLQIqndllTGKLRRLLIT-GWHKFYVANHLKSGDVCEF 225 666677777777735668*******988666..5***********88888888888888777.***************** PP EE-SS CS B3 83 kldgr 87 +l+ SMil_00009455-RA_Salv 226 TLNPA 230 *8744 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.854	7	101	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0024	9	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-11	10	97	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.28E-10	14	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.58E-9	15	97	No hit	No description
Pfam	PF02362	4.2E-10	16	99	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.83E-17	136	247	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.6E-18	139	247	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.81E-15	141	246	No hit	No description
SMART	SM01019	1.1E-4	141	248	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.112	142	248	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-13	143	232	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAKDEVAATS KIVLSAGFKK KMMLPSVYYK KIKQEKSEWA ILKTPKGKWR VKVCRDDDGD 60 IFFKNGWSEF ADENAFNNHD SLVLEHTCNL MCFNVNVNVA DVAAVSTPPQ NRGSSQAKSC 120 KGKEKKKDVV SPHTHSQWPQ FFRKRMTDYC GTKGAMVHIP LELARSNNLT SKESVSLMDP 180 GGKEWAFKLQ IQNDLLTGKL RRLLITGWHK FYVANHLKSG DVCEFTLNPA SSSTSTTAFF 240 HVHITRLDES TTSFT

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	2e-07	B3 family protein