PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009453-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 257aa    MW: 30227.4 Da    PI: 6.5274
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009453-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.4e-1413102198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                            ffkvl+p   + ++ l+lp    +e +++  +s+ ++le++ g +W+v l+  ++++   + l +GW +Fv+ + Lk g+fvvF+++g
  SMil_00009453-RA_Salv  13 FFKVLMP---GFHQKLSLPPIVSKELEKQ--KSRRVILESRIG-KWRVSLC--RNDENglICLNQGWPQFVDRHALKLGEFVVFEHTG 92 
                            7777744...4455699999998888766..677899999776.6*****5..4444446*************************888 PP

                            SSEE..EEEEE- CS
                     B3  87 rsefelvvkvfr 98 
                            + +f  +v+v++
  SMil_00009453-RA_Salv  93 DLNF--NVSVYK 102
                            6666..887776 PP
2B349.29.8e-16155240187
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                            f+k+++  +++k + + +p  f++++++   ++++++l+   sgr+W+vk+    ++ ++ ++kGW  F ++n+Lk+gD +vF+l++r
  SMil_00009453-RA_Salv 155 FEKTMKARHATKWATVNIPFAFLRSNNLGM-QQRDVVLRVpHSGREWDVKI-LAERGVWFRMRKGWYAFYESNNLKDGDRCVFRLNRR 240
                            89************************5553.4569***996678*******.5666668*************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.9710104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-1811106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1712109IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-1513104IPR003340B3 DNA binding domain
PfamPF023621.1E-1113102IPR003340B3 DNA binding domain
CDDcd100172.17E-1313102No hitNo description
Gene3DG3DSA:2.40.330.103.3E-17149256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16152241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.26E-14154255No hitNo description
SMARTSM010191.4E-10155257IPR003340B3 DNA binding domain
PROSITE profilePS5086313.324155257IPR003340B3 DNA binding domain
PfamPF023629.2E-13155240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEGKHGRSIT KDFFKVLMPG FHQKLSLPPI VSKELEKQKS RRVILESRIG KWRVSLCRND  60
ENGLICLNQG WPQFVDRHAL KLGEFVVFEH TGDLNFNVSV YKTNFCENEF DDDVEEKEEE  120
GTVALIPLKQ SKEEEGTEQS TMKEEEEEEE EDMFFEKTMK ARHATKWATV NIPFAFLRSN  180
NLGMQQRDVV LRVPHSGREW DVKILAERGV WFRMRKGWYA FYESNNLKDG DRCVFRLNRR  240
LLTSTTIVFD VEIIRAK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-14B3 family protein