PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009429-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 440aa MW: 48313.2 Da PI: 5.3825

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009429-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	8.2e-17	40	84	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++v+a k++G W+ I +++g ++t+ q++s+ qk+ SMil_00009429-RA_Salv 40 RERWTEEEHQRFVEALKLYGRA-WRQIEEHVG-NKTAIQIRSHAQKF 84 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.84E-16	34	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.56	35	89	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.6E-17	38	87	IPR006447	Myb domain, plants
SMART	SM00717	8.8E-13	39	87	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-13	40	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-9	40	80	IPR009057	Homeodomain-like
CDD	cd00167	1.32E-9	42	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MAAEAEDASG VVSSESAAAQ ADRNSYAPKV RKPYTITKQR ERWTEEEHQR FVEALKLYGR 60 AWRQIEEHVG NKTAIQIRSH AQKFFAKVTR DSSVDAEGSS SPIAIPPPRP KKKPLHPYPR 120 KNVDRAEVTA THQQEGVTDD VSIAKGENYS PTSVFSAIGS DNLESSVADV HKSRLSPASC 180 ATDDFSANLF TDNDHETSNT SSKEDHGFGL PMKISSASLP DNKSTMKFEL FPQETESTLD 240 SVYSVEPCTS IKLFGKTVVV RDTPKQSLEV TENSESSQPG LVNEESESNS DNVVKGFTSN 300 NLDSEVAFGF VSGNAAPVAN VYCHVENMFA LPWYTWYPRP VYPYALSCER TAAQKGFKEE 360 LKDEENQMEG SLVGSNGGST GGLNGDSRNC DVVESKHQSS PRKESAKGFV PYKRCLAERD 420 DESSLSLLQG RQGQRARVCS

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MAAEAEDASG VVSSESAAAQ ADRNSYAPKV RKPYTITKQR ERWTEEEHQR FVEALKLYGR  60
AWRQIEEHVG NKTAIQIRSH AQKFFAKVTR DSSVDAEGSS SPIAIPPPRP KKKPLHPYPR  120
KNVDRAEVTA THQQEGVTDD VSIAKGENYS PTSVFSAIGS DNLESSVADV HKSRLSPASC  180
ATDDFSANLF TDNDHETSNT SSKEDHGFGL PMKISSASLP DNKSTMKFEL FPQETESTLD  240
SVYSVEPCTS IKLFGKTVVV RDTPKQSLEV TENSESSQPG LVNEESESNS DNVVKGFTSN  300
NLDSEVAFGF VSGNAAPVAN VYCHVENMFA LPWYTWYPRP VYPYALSCER TAAQKGFKEE  360
LKDEENQMEG SLVGSNGGST GGLNGDSRNC DVVESKHQSS PRKESAKGFV PYKRCLAERD  420
DESSLSLLQG RQGQRARVCS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548215.1	0.0	protein REVEILLE 7-like isoform X2
TrEMBL	A0A4D8ZQC5	1e-165	A0A4D8ZQC5_SALSN; Circadian clock associated 1
STRING	Migut.O00255.1.p	1e-105	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7447	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	4e-43	MYB_related family protein