PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009415-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 272aa    MW: 30207.9 Da    PI: 5.0351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009415-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20110160155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            ++++GVr+++ +g+W AeIrdp     r +r++lg+f+taeeAa a+++a  +++g
  SMil_00009415-RA_Salv 110 KKFRGVRQRP-WGKWSAEIRDPA----RrARVWLGTFDTAEEAAMAYDKASIEIRG 160
                            59********.**********82....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.73E-33110167No hitNo description
Gene3DG3DSA:3.30.730.108.1E-31111167IPR001471AP2/ERF domain
SMARTSM003807.0E-37111174IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-22111167IPR016177DNA-binding domain
PROSITE profilePS5103223.67111168IPR001471AP2/ERF domain
PfamPF008474.8E-14111160IPR001471AP2/ERF domain
PRINTSPR003671.2E-11112123IPR001471AP2/ERF domain
PRINTSPR003671.2E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSSRHLPIKY SEQKIVTTKF LPCSGAATAP YHPPRVVRIF VTDGDATDSS GDECDHSCGR  60
QVRRHVNEIR LERENTAAAV KKAATEGARK KKKRPAPARP GAGNEEGKGK KFRGVRQRPW  120
GKWSAEIRDP ARRARVWLGT FDTAEEAAMA YDKASIEIRG PDAVTNFLKP PQREAEETTV  180
AEECSGKEEG YGSPISVLGF LGFRGNDLMN DKFEDEVLMD ESLPLDRSFL DDFDSLPLIC  240
DEISVPKLDI DDFASLPWDF VDGLLVDDSS FT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22108167262ATERF1
3gcc_A2e-22108167262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094793.11e-66pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A4D9AEC81e-102A0A4D9AEC8_SALSN; Uncharacterized protein
STRINGMigut.B01832.1.p2e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-40cytokinin response factor 4