PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009415-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 30207.9 Da PI: 5.0351 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.7e-20 | 110 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W AeIrdp r +r++lg+f+taeeAa a+++a +++g SMil_00009415-RA_Salv 110 KKFRGVRQRP-WGKWSAEIRDPA----RrARVWLGTFDTAEEAAMAYDKASIEIRG 160 59********.**********82....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.73E-33 | 110 | 167 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-31 | 111 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-37 | 111 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-22 | 111 | 167 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.67 | 111 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-14 | 111 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MSSRHLPIKY SEQKIVTTKF LPCSGAATAP YHPPRVVRIF VTDGDATDSS GDECDHSCGR 60 QVRRHVNEIR LERENTAAAV KKAATEGARK KKKRPAPARP GAGNEEGKGK KFRGVRQRPW 120 GKWSAEIRDP ARRARVWLGT FDTAEEAAMA YDKASIEIRG PDAVTNFLKP PQREAEETTV 180 AEECSGKEEG YGSPISVLGF LGFRGNDLMN DKFEDEVLMD ESLPLDRSFL DDFDSLPLIC 240 DEISVPKLDI DDFASLPWDF VDGLLVDDSS FT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 108 | 167 | 2 | 62 | ATERF1 |
3gcc_A | 2e-22 | 108 | 167 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 93 | RKKKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094793.1 | 1e-66 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A4D9AEC8 | 1e-102 | A0A4D9AEC8_SALSN; Uncharacterized protein | ||||
STRING | Migut.B01832.1.p | 2e-62 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-40 | cytokinin response factor 4 |