PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009361-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21008.9 Da    PI: 10.0761
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009361-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.13.7e-261767151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+i+n s rqvtfskRr g++KKA+EL +LCdae+a+i+fs tgkl++yss
  SMil_00009361-RA_Salv 17 KKIDNLSTRQVTFSKRRRGLFKKAQELATLCDAEIALIVFSATGKLFDYSS 67
                           68***********************************************96 PP

2K-box36.91.5e-1392166579
                  K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                            ++ ++++++ +    +++ ++ke  +L  e+R+l GedL+ L l+eL +Le+ +e +l ++ ++K+   +e+i +
  SMil_00009361-RA_Salv  92 QTLNNQQSNFQAGGDDYDAINKEFTSLTLELRQLNGEDLQGLGLNELARLERVVELALGRVGKTKQGSSVESITN 166
                            444578888999999*************************************************99888888766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.875969IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-38968IPR002100Transcription factor, MADS-box
CDDcd002651.44E-371184No hitNo description
SuperFamilySSF554551.96E-291192IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-261131IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001165IPR002100Transcription factor, MADS-box
PfamPF003198.8E-241865IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-263146IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-264667IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.349101188IPR002487Transcription factor, K-box
PfamPF014862.8E-8102165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
LLVSPFLHMV RQKIQIKKID NLSTRQVTFS KRRRGLFKKA QELATLCDAE IALIVFSATG  60
KLFDYSSSSM MQIIQRLKKL QSEGSYSNRH RQTLNNQQSN FQAGGDDYDA INKEFTSLTL  120
ELRQLNGEDL QGLGLNELAR LERVVELALG RVGKTKQGSS VESITNSSGF GEDMSVSDTA  180
LKLGYVSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18974166MEF2C
5f28_B1e-18974166MEF2C
5f28_C1e-18974166MEF2C
5f28_D1e-18974166MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551410.12e-60MADS-box protein SVP isoform X3
SwissprotQ9FUY65e-42JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A4D8XQM71e-78A0A4D8XQM7_SALSN; Uncharacterized protein
STRINGMigut.B00557.1.p2e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]