PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009361-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 188aa MW: 21008.9 Da PI: 10.0761 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.1 | 3.7e-26 | 17 | 67 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n s rqvtfskRr g++KKA+EL +LCdae+a+i+fs tgkl++yss SMil_00009361-RA_Salv 17 KKIDNLSTRQVTFSKRRRGLFKKAQELATLCDAEIALIVFSATGKLFDYSS 67 68***********************************************96 PP | |||||||
2 | K-box | 36.9 | 1.5e-13 | 92 | 166 | 5 | 79 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 ++ ++++++ + +++ ++ke +L e+R+l GedL+ L l+eL +Le+ +e +l ++ ++K+ +e+i + SMil_00009361-RA_Salv 92 QTLNNQQSNFQAGGDDYDAINKEFTSLTLELRQLNGEDLQGLGLNELARLERVVELALGRVGKTKQGSSVESITN 166 444578888999999*************************************************99888888766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.875 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.8E-38 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.44E-37 | 11 | 84 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-29 | 11 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-26 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 11 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-24 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-26 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-26 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.349 | 101 | 188 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.8E-8 | 102 | 165 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
LLVSPFLHMV RQKIQIKKID NLSTRQVTFS KRRRGLFKKA QELATLCDAE IALIVFSATG 60 KLFDYSSSSM MQIIQRLKKL QSEGSYSNRH RQTLNNQQSN FQAGGDDYDA INKEFTSLTL 120 ELRQLNGEDL QGLGLNELAR LERVVELALG RVGKTKQGSS VESITNSSGF GEDMSVSDTA 180 LKLGYVSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 9 | 74 | 1 | 66 | MEF2C |
5f28_B | 1e-18 | 9 | 74 | 1 | 66 | MEF2C |
5f28_C | 1e-18 | 9 | 74 | 1 | 66 | MEF2C |
5f28_D | 1e-18 | 9 | 74 | 1 | 66 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020551410.1 | 2e-60 | MADS-box protein SVP isoform X3 | ||||
Swissprot | Q9FUY6 | 5e-42 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A4D8XQM7 | 1e-78 | A0A4D8XQM7_SALSN; Uncharacterized protein | ||||
STRING | Migut.B00557.1.p | 2e-55 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-42 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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