PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009256-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 449aa    MW: 50289.7 Da    PI: 11.1738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009256-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
  SMil_00009256-RA_Salv 14 KGPWTPEEDQKLLAYIQEHGHGSWRALPPKAGLQRCGKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding24.18.2e-0867107148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++ +E++ +++++++lG+       + ++ +Rt++++k++w+++l
  SMil_00009256-RA_Salv  67 RGKFSLQEEQTIIQLHALLGNS------EPLP-KRTDNEIKNYWNTHL 107
                            89******************99......99**.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129423.656965IPR017930Myb domain
SuperFamilySSF466896.36E-2411103IPR009057Homeodomain-like
SMARTSM007177.7E-141363IPR001005SANT/Myb domain
PfamPF002496.5E-161461IPR001005SANT/Myb domain
CDDcd001671.79E-111661No hitNo description
Gene3DG3DSA:1.10.10.604.4E-1665112IPR009057Homeodomain-like
PROSITE profilePS5129412.4466111IPR017930Myb domain
SMARTSM007172.1E-566109IPR001005SANT/Myb domain
PfamPF002495.1E-767107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIQ EHGHGSWRAL PPKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNSEP LPKRTDNEIK NYWNTHLKKR LVKMGIDPTT  120
HKPKNHALGC SQPKEIANLS HMAQWESARL EAEARIVRES KQLVSNSYGS QLINAGRRPP  180
RGPPASTYSK CGKPRGPGEK TWSRRRRPSS PPPATSSPPL HTQLLRQRID QRRHHYVGKA  240
YQDEQNKGIA VLGNSMQLHD QVTVTDPNSA TNYTDSLRFP SFLDGFGDVH GSGQADSVVF  300
EDNKVNYWSN ILNVVNSPMA ISLESLRPFQ FRKSQIPNSQ SQLARPPPLQ NRFRFRRPSG  360
APRPPAVAVL LGRRRRSQTA SPTATLAQSR RRAASGAPQQ LAAPASRDLA QPPQPLVPPP  420
SLSTPFLLLL LLLLLLLLLL LLLLSFFLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21121115108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594210.0KF059421.1 Salvia miltiorrhiza MYB-related transcription factor (MYB67) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075645.11e-111transcription factor MYB28-like
TrEMBLA0A059PRS50.0A0A059PRS5_SALMI; MYB-related transcription factor
STRINGVIT_14s0108g01080.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.24e-95myb domain protein 16