PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009254-RA_Salv
Common NameMYB51
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 305aa    MW: 34138.9 Da    PI: 8.8879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009254-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171764148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT eEd++l+ +++++G g+W+t +++ g+ R++k+c++rw +yl
  SMil_00009254-RA_Salv 17 KGPWTREEDQKLLAYIEEHGHGSWRTLPSKAGLQRCGKSCRLRWTNYL 64
                           79********************************************97 PP
2Myb_DNA-binding482.9e-1570113146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+++t E++ +++++++lG++ W+ Ia+++  +Rt++++k++w++
  SMil_00009254-RA_Salv  70 RGKFSTHEEKTIIRLHALLGNR-WSVIAAHLS-KRTDNEIKNYWNT 113
                            89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.2651268IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-241367IPR009057Homeodomain-like
SuperFamilySSF466895.99E-2915111IPR009057Homeodomain-like
SMARTSM007179.8E-141666IPR001005SANT/Myb domain
PfamPF002491.6E-151764IPR001005SANT/Myb domain
CDDcd001673.69E-111964No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2468119IPR009057Homeodomain-like
SMARTSM007173.2E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129417.24169119IPR017930Myb domain
PfamPF002491.5E-1370113IPR001005SANT/Myb domain
CDDcd001677.99E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVGEGSDCKD SMAKLKKGPW TREEDQKLLA YIEEHGHGSW RTLPSKAGLQ RCGKSCRLRW  60
TNYLRPDIKR GKFSTHEEKT IIRLHALLGN RWSVIAAHLS KRTDNEIKNY WNTRLKKRLT  120
RMGIDPATHK PKSNSGQSRQ HADLSHMAQW EAARLEAEAR LARESKLPLL HKLSSVAPPA  180
PPRHMAALPC LDVLKVWQSS AIPSCFFRSA ASCSSLESPT STLNFSCSSS LPAPVAANEI  240
VAAETEGNMD ISYPPYDVYS SNYDCAFSQD SGMRGDLVGE MEESKVYWNH LLNLVSSPMM  300
ELPTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26151195108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594050.0KF059405.1 Salvia miltiorrhiza MYB-related transcription factor (MYB51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847598.11e-121PREDICTED: myb-related protein 306-like
SwissprotQ9LXF11e-92MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A059PRJ70.0A0A059PRJ7_SALMI; MYB-related transcription factor
STRINGMigut.L01264.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.14e-83myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  4. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  5. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]