PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009234-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 378aa    MW: 41618 Da    PI: 6.6329
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009234-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-10247294552
                            CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                            kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l
  SMil_00009234-RA_Salv 247 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLL 294
                            9****************************************9998777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-10243309IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.887245295IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.32E-10247295No hitNo description
PfamPF001703.3E-9247294IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-10247297No hitNo description
CDDcd147036.97E-21248288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
LLVVWHFLSK VHLGFRDYTY WRVWMMDKDK SHHGNILPPS GRYAAFSPPG SSYNAKSEQA  60
GLSSLPPLGP GSSSEQGHFG HGMPSDSRQF SHDISRMPDN PPKNMGHRRA HSEILTLPDD  120
ISFDSDLGVV GGLDGPSFSD DTEDDLLSMY LDMDKFNSTS ATSSFQVGES SNAMAAEQGL  180
SSGPLGAANQ SLSDKPRIRH QHSQSMDGST TIKPEMLMSG PEDPASADAK KAMSAAKLAE  240
LALIDPKRAK RIWANRQSAA RSKERKMRYI AELERKVQTL QTEATSLSAQ LTLLQLALTH  300
EYLYRMLIVS CILKQRDTNG LTAENSELKL RLQTMEQQVH LQDALNDALK EEIQHLKAAY  360
VANLGCDLLA QLLLASLV
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091638.10.0probable transcription factor PosF21
RefseqXP_011091639.10.0probable transcription factor PosF21
SwissprotQ040881e-128POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A4D8ZDK40.0A0A4D8ZDK4_SALSN; Uncharacterized protein
STRINGMigut.G01348.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-112bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]