PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009148-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YC

Protein Properties

Length: 262aa MW: 29054.7 Da PI: 5.5495

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009148-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177	1.8e-55	79	183	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 ql++fw++q i+++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r SMil_00009148-RA_Salv 79 QLQAFWANQmqeIDQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 166 89****9777789********************************************************************* PP NF-YC 86 tdifdflvdivprdelk 102 td+fdflvdi+prdelk SMil_00009148-RA_Salv 167 TDVFDFLVDIIPRDELK 183 ************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.56E-33	71	173	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-37	93	165	IPR009072	Histone-fold
Pfam	PF00808	2.3E-21	101	164	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDHSDQRQQQ LAHQNQQQQQ GVAAGGGSMA YATPPYQTAP MVATGTPAGT VSSPTSFTPQ 60 QQLAYHQAQQ FHSQQQQQQL QAFWANQMQE IDQTTDFKNH SLPLARIKKI MKADEDVRMI 120 SAEAPVIFAK ACEMFILELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF DFLVDIIPRD 180 ELKEEGLGIT KAAIPLVGST PDALPYYYVP PQAPVGAPGM IMGKPIDQAA LYGGQPPPPF 240 MPWPQSHPSQ QPPPSQQEQQ SE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-58	87	179	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	157	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095726.1	1e-136	nuclear transcription factor Y subunit C-2
Refseq	XP_011095727.1	1e-136	nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	3e-79	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A4D9B5N4	1e-153	A0A4D9B5N4_SALSN; Uncharacterized protein
STRING	cassava4.1_014024m	1e-115	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-73	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]