PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009114-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WOX
Protein Properties Length: 289aa    MW: 31553.3 Da    PI: 6.0179
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009114-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.21e-0647653957
                           S-HHHHHHHHHHHHHHHHC CS
               Homeobox 39 LterqVkvWFqNrRakekk 57
                           + +++V++WFqNr+ + k+
  SMil_00009114-RA_Salv 47 VGDANVFYWFQNRKSRSKH 65
                           6789************995 PP
2Wus_type_Homeobox44.24.5e-1543674165
      Wus_type_Homeobox 41 eyGkiedkNVfyWFQNrkaRerqkq 65
                           eyG+++d+NVfyWFQNrk+R+++kq
  SMil_00009114-RA_Salv 43 EYGQVGDANVFYWFQNRKSRSKHKQ 67
                           8**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-43271IPR009057Homeodomain-like
SuperFamilySSF466894.1E-53671IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNTT HLQWPHDINS ISSTKSPYAQ GIEYGQVGDA NVFYWFQNRK  60
SRSKHKQRQL QTSKAQPQSA AAPPPAPSPS SSSSDKSSSE KSISVGPASV IDLLSSPTAS  120
VNQPFFHGST DFLSEPLYFP VQQSAAQEFG FPVADQNPNF LLSELMLMSN CPSKKNEEQF  180
QSAPTNPPAV PPSFCVPSPS SDHLLQGECD LMCDGAGVEE CVPTKSTVFI NDVCFEVGVG  240
PFNVREAFGD DAVLIQSSGQ PVLTDEWGVT LHPLHHGAFY YLLRPFIKI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096377.12e-99WUSCHEL-related homeobox 9
RefseqXP_011096378.12e-99WUSCHEL-related homeobox 9
RefseqXP_011096381.12e-99WUSCHEL-related homeobox 9
TrEMBLA0A4D9AMH21e-114A0A4D9AMH2_SALSN; Uncharacterized protein
STRINGMigut.M01086.1.p2e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.17e-21homeobox-3