PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009114-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WOX | ||||||||
Protein Properties | Length: 289aa MW: 31553.3 Da PI: 6.0179 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.2 | 1e-06 | 47 | 65 | 39 | 57 |
S-HHHHHHHHHHHHHHHHC CS Homeobox 39 LterqVkvWFqNrRakekk 57 + +++V++WFqNr+ + k+ SMil_00009114-RA_Salv 47 VGDANVFYWFQNRKSRSKH 65 6789************995 PP | |||||||
2 | Wus_type_Homeobox | 44.2 | 4.5e-15 | 43 | 67 | 41 | 65 |
Wus_type_Homeobox 41 eyGkiedkNVfyWFQNrkaRerqkq 65 eyG+++d+NVfyWFQNrk+R+++kq SMil_00009114-RA_Salv 43 EYGQVGDANVFYWFQNRKSRSKHKQ 67 8**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-4 | 32 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.1E-5 | 36 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNTT HLQWPHDINS ISSTKSPYAQ GIEYGQVGDA NVFYWFQNRK 60 SRSKHKQRQL QTSKAQPQSA AAPPPAPSPS SSSSDKSSSE KSISVGPASV IDLLSSPTAS 120 VNQPFFHGST DFLSEPLYFP VQQSAAQEFG FPVADQNPNF LLSELMLMSN CPSKKNEEQF 180 QSAPTNPPAV PPSFCVPSPS SDHLLQGECD LMCDGAGVEE CVPTKSTVFI NDVCFEVGVG 240 PFNVREAFGD DAVLIQSSGQ PVLTDEWGVT LHPLHHGAFY YLLRPFIKI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096377.1 | 2e-99 | WUSCHEL-related homeobox 9 | ||||
Refseq | XP_011096378.1 | 2e-99 | WUSCHEL-related homeobox 9 | ||||
Refseq | XP_011096381.1 | 2e-99 | WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A4D9AMH2 | 1e-114 | A0A4D9AMH2_SALSN; Uncharacterized protein | ||||
STRING | Migut.M01086.1.p | 2e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5942 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 7e-21 | homeobox-3 |