PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00009072-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 17161.4 Da PI: 7.5754 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 7 | 56 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a++aa++ + g SMil_00009072-RA_Salv 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDAAARMMCG 56 69******9.**********8.....334**********************98866 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.00E-21 | 6 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-33 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-36 | 7 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-12 | 7 | 56 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.956 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 7 | 65 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDAA ARMMCGARAR 60 TNFAYDASEP SAKLLSATLM AKLQKCHVTS LKMANKAVKQ SSEAEQQAAR PHDDQNENGM 120 MIKSLEDDQI EQMIQELLDY SSIELSSVMD N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 8 | 63 | 6 | 62 | ATERF1 |
3gcc_A | 1e-16 | 8 | 63 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022842116.1 | 1e-74 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 2e-59 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A4D9BP20 | 4e-73 | A0A4D9BP20_SALSN; Uncharacterized protein | ||||
STRING | Migut.I00708.1.p | 3e-65 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-43 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|