PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008967-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26122.2 Da PI: 6.511 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 44 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr +k+ g+Wv+e+rd + r++lg+f t+e Aa a++ a+++l+g SMil_00008967-RA_Salv 44 PVYRGVR-RKNGGKWVCEVRDK-----KSRIWLGTFPTPETAAVAHDVAALALHG 92 68****9.777**********4.....6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-10 | 44 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-24 | 45 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.89 | 45 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-18 | 45 | 101 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-25 | 45 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.69E-22 | 46 | 102 | No hit | No description |
PRINTS | PR00367 | 8.9E-8 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDLARHEHPS SARSPLQIAT SPETPAPAGK KRAGRKVVNE TRHPVYRGVR RKNGGKWVCE 60 VRDKKSRIWL GTFPTPETAA VAHDVAALAL HGDRTPLNFP AAAAQLPRPR SASHHDIQRA 120 ASEAARDFCT VWTSSSSRHV SQETKIIINS SDTNLPAKKD DSAERSSAES LDDCWSCDQS 180 PTGGFVDEEA VFNMPTLLDS MAEGMLLTPL AMKKGFNWSQ YEVDDDDANA MDLSLWVD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552608.1 | 7e-68 | dehydration-responsive element-binding protein 1D-like | ||||
TrEMBL | A0A4D9A9D3 | 1e-117 | A0A4D9A9D3_SALSN; EREBP-like factor | ||||
STRING | XP_002532187.1 | 2e-58 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 4e-36 | C-repeat/DRE binding factor 2 |