PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008967-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 238aa    MW: 26122.2 Da    PI: 6.511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008967-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-164492155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr +k+ g+Wv+e+rd      + r++lg+f t+e Aa a++ a+++l+g
  SMil_00008967-RA_Salv 44 PVYRGVR-RKNGGKWVCEVRDK-----KSRIWLGTFPTPETAAVAHDVAALALHG 92
                           68****9.777**********4.....6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-104492IPR001471AP2/ERF domain
SMARTSM003808.2E-2445106IPR001471AP2/ERF domain
PROSITE profilePS5103220.8945100IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1845101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-2545101IPR001471AP2/ERF domain
PRINTSPR003678.9E-84657IPR001471AP2/ERF domain
CDDcd000183.69E-2246102No hitNo description
PRINTSPR003678.9E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDLARHEHPS SARSPLQIAT SPETPAPAGK KRAGRKVVNE TRHPVYRGVR RKNGGKWVCE  60
VRDKKSRIWL GTFPTPETAA VAHDVAALAL HGDRTPLNFP AAAAQLPRPR SASHHDIQRA  120
ASEAARDFCT VWTSSSSRHV SQETKIIINS SDTNLPAKKD DSAERSSAES LDDCWSCDQS  180
PTGGFVDEEA VFNMPTLLDS MAEGMLLTPL AMKKGFNWSQ YEVDDDDANA MDLSLWVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552608.17e-68dehydration-responsive element-binding protein 1D-like
TrEMBLA0A4D9A9D31e-117A0A4D9A9D3_SALSN; EREBP-like factor
STRINGXP_002532187.12e-58(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.14e-36C-repeat/DRE binding factor 2