PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008909-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 556aa MW: 60032.1 Da PI: 6.04

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008909-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.6e-34	261	315	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ SMil_00008909-RA_Salv 261 KQRMRWTPELHETFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 315 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.657	258	318	IPR017930	Myb domain
SuperFamily	SSF46689	6.81E-18	259	315	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-31	260	317	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-25	261	315	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-10	263	314	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-10	346	372	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
METKHALPIQ RSGPRQISSI GASASLSASF NVPPTVLEET YPRFSESQQV SLERELMQRP 60 PAVVSSLSSN SGVVGHIFSS SSGISTDLHF SSIQQQQENP PRQSPFISQS TSSRKSVTLP 120 HSVDSQLLQS TASSHFNKEN NESWCTDTLP DFLDFPMSTA IQSSQLYGSK SSGITIPHED 180 LGKPNDWQDW ADQLITDNDA LTADWSGLLA DASVADPEPK HSQQCPSISN QQPHIPQQLP 240 STSGEICTSG AQSSSNAAPG KQRMRWTPEL HETFVEAVNK LGGSERATPK GVLKLMKVEG 300 LTIYHVKSHL QKYRTARYKP ETIEESSERK SASIEDLSSL DLKTGIEITE ALRLQMEVQK 360 RLHEQLEPRR KVLHRRSSSS AGFGQARRTG RRARCDGLDA VQGELPAEAG VDRGIGGRGE 420 GGFQAIGRSR GAGEDNGAGF GGNSDFAAFR ACEEAVAVLR QIPVSDDDEQ ILQLLMSSDC 480 MKSMAIVLQR GSGEARFGVL VSALMVGLAI VFAHGAFRVP EDLFLDEAEP LARVPSLLSF 540 LAGGAPAPQP PIAARA

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

METKHALPIQ RSGPRQISSI GASASLSASF NVPPTVLEET YPRFSESQQV SLERELMQRP  60
PAVVSSLSSN SGVVGHIFSS SSGISTDLHF SSIQQQQENP PRQSPFISQS TSSRKSVTLP  120
HSVDSQLLQS TASSHFNKEN NESWCTDTLP DFLDFPMSTA IQSSQLYGSK SSGITIPHED  180
LGKPNDWQDW ADQLITDNDA LTADWSGLLA DASVADPEPK HSQQCPSISN QQPHIPQQLP  240
STSGEICTSG AQSSSNAAPG KQRMRWTPEL HETFVEAVNK LGGSERATPK GVLKLMKVEG  300
LTIYHVKSHL QKYRTARYKP ETIEESSERK SASIEDLSSL DLKTGIEITE ALRLQMEVQK  360
RLHEQLEPRR KVLHRRSSSS AGFGQARRTG RRARCDGLDA VQGELPAEAG VDRGIGGRGE  420
GGFQAIGRSR GAGEDNGAGF GGNSDFAAFR ACEEAVAVLR QIPVSDDDEQ ILQLLMSSDC  480
MKSMAIVLQR GSGEARFGVL VSALMVGLAI VFAHGAFRVP EDLFLDEAEP LARVPSLLSF  540
LAGGAPAPQP PIAARA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-32	260	319	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-32	260	319	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-32	260	319	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-32	260	319	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-32	260	319	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-32	260	319	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-32	260	319	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-32	260	319	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080098.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
TrEMBL	A0A4D8YMM3	0.0	A0A4D8YMM3_SALSN; Uncharacterized protein
STRING	Migut.D00466.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2753	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	9e-73	G2-like family protein