PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008803-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 117aa    MW: 13337.7 Da    PI: 6.5184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008803-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-20960256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr+++ +g+++AeIrdp+ ng  +r +lg+f +aeeAa+a+++a+ +l+g+
  SMil_00008803-RA_Salv  9 KYRGVRQRP-WGKFAAEIRDPNRNG--ARLWLGTFESAEEAARAYDRAAYALRGH 60
                           8********.**********96665..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.698967IPR001471AP2/ERF domain
SMARTSM003807.3E-35973IPR001471AP2/ERF domain
CDDcd000181.81E-20969No hitNo description
SuperFamilySSF541713.79E-24968IPR016177DNA-binding domain
PfamPF008475.4E-15960IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-33968IPR001471AP2/ERF domain
PRINTSPR003672.5E-111021IPR001471AP2/ERF domain
PRINTSPR003672.5E-113349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEGAQKDHKY RGVRQRPWGK FAAEIRDPNR NGARLWLGTF ESAEEAARAY DRAAYALRGH  60
QAILNFPNDG HYAAQPAQPQ PQPQPEPSSR STQPPIELEY FHNDLLEDLL QTKDTPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29667263ATERF1
3gcc_A2e-29667263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567929.11e-40PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016710838.12e-40PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_017648694.16e-41PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A4D9BR501e-46A0A4D9BR50_SALSN; EREBP-like factor
STRINGGorai.007G145700.11e-39(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]