PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008705-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 368aa    MW: 41250 Da    PI: 5.1361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008705-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-1953102255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  SMil_00008705-RA_Salv  53 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 102
                            789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-3152109No hitNo description
SuperFamilySSF541712.68E-1953110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-2753109IPR001471AP2/ERF domain
PROSITE profilePS5103219.55953110IPR001471AP2/ERF domain
SMARTSM003801.9E-3653116IPR001471AP2/ERF domain
PfamPF008478.7E-1453102IPR001471AP2/ERF domain
PRINTSPR003675.0E-85465IPR001471AP2/ERF domain
PRINTSPR003675.0E-87692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MKQMARKRKA CDFVDDEEKL NPREKNLSPK WDEMVKEAAA VAAVGGIRRA RKRFVGVRQR  60
PSGRWVAEIK DTIQKIRVWL GTFDTAEEAA RAYDEAACLL RGANTRTNFW PTNSNSSSTP  120
ALSSKITNLL LSRIKARNSA LITANYITTL HPSSSVSLTP PVSQEHAATG DTGEIPDFSE  180
SSFTDFLNDP DENYTIENNM TDHKYSSFDS FATQADEKSD ETEVDDEMMV MMEPVDFQFV  240
DEIGSSIEYS AFEIAEEISR PMVQEDEQLM LSEAMKRMNY ERKFSASLYA FNGINECLKL  300
SSSSTRSSSS NSPHRSKGVL WSKSSFKVRE AGREKPHKDQ GRATAAPELS ADRADTCLRE  360
FCTAEMKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1446118779Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098777.11e-131ethylene-responsive transcription factor 10-like
TrEMBLA0A4D9BU191e-158A0A4D9BU19_SALSN; EREBP-like factor
STRINGXP_008379843.12e-96(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11