PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008672-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 431aa    MW: 46684.3 Da    PI: 8.4037
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008672-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-093963327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                            + C ++ rtG C yG++C+++H++
  SMil_00008672-RA_Salv 39 LPDCAYYVRTGSCGYGAKCRYNHPR 63
                           589********************96 PP
2zf-CCCH36.58.4e-12110134327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C++++rtGtCk+G +CkF+H++
  SMil_00008672-RA_Salv 110 EPPCQYYLRTGTCKFGMSCKFNHPK 134
                            79*********************96 PP
3zf-CCCH36.96.1e-12155180227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C+++++tG+Ck+G +CkF H++
  SMil_00008672-RA_Salv 155 GEKECSYYLKTGQCKFGITCKFDHPQ 180
                            7899********************97 PP
4zf-CCCH39.21.2e-12289313125
                            --S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                            +++++C++++rtG CkyG++C+++H
  SMil_00008672-RA_Salv 289 PGQPECKYYMRTGDCKYGSSCRYNH 313
                            5789********************* PP
5zf-CCCH28.23.3e-09336360226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            +   C+f+++ G+Ck+G +Ck+ H+
  SMil_00008672-RA_Salv 336 GVQACSFYMQKGQCKFGRTCKYDHP 360
                            5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-53663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.773664IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-73963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-54165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-44263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253107135IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6110135IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5112133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314153181IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5153180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6155182IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9155180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5159182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089288316IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6288315IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-10290314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6292315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5294315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07334362IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5334361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6336365IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-7336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4339360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MALYGDQQQV EWPQDSGLED SMRRLSLWER EVYPERPGLP DCAYYVRTGS CGYGAKCRYN  60
HPRDRSSSVR NVAGFGTSWG LFQGVGAGLG LSILEVDLLG VGEYPERVGE PPCQYYLRTG  120
TCKFGMSCKF NHPKNAGGSL TSAPLNSYGY PLRPGEKECS YYLKTGQCKF GITCKFDHPQ  180
SDGTSVSASA RPFYPTVQSL SSPSHEQYDS TTSSYRVARP SLFLVHMSLG PVSPAPSPGG  240
QGSVGATSVY GLSQLGSSPP AFVGAYSHLP SSAGPSGSIV HEQKFPERPG QPECKYYMRT  300
GDCKYGSSCR YNHTPDWAVA KSSCGLSPLG LPLRPGVQAC SFYMQKGQCK FGRTCKYDHP  360
IATLKYSPAS SYTEMPGTRY RPGLTAATTL LPSYSFQEVQ GERIAGSSVE PGINRVWHSG  420
NSSSDSANLM L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833419.11e-175PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_012833423.11e-175PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-134C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D9AJ670.0A0A4D9AJ67_SALSN; Uncharacterized protein
STRINGMigut.D00164.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-125C3H family protein