PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008641-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 697aa    MW: 78660.3 Da    PI: 7.0673
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008641-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-192277156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +++ ++++++q+++Le++++++++p++++r++L+++lgL+++q+k+WFqN+R++ k
  SMil_00008641-RA_Salv 22 KKQYHRHSTQQIQQLEDFYKECPHPDKNQRQQLSRELGLDQKQIKFWFQNKRTQIK 77
                           688899**********************************************9877 PP
2START1394.8e-442194365206
                            HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
                  START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                             a++el+ +  ++ep+W kss     ++ +d + + f++s        + e +++sg v m++  l e lld++ +W+ +++    ka
  SMil_00008641-RA_Salv 219 GAMNELIELFRVNEPLWIKSSadgrYMLHRDSYDKLFPKSSHlkttsARFESSKDSGEVAMAAIHLIEMLLDVN-KWKDMFPtivmKA 305
                            589******************8888778888888888776669999999*************************.************* PP

                            EEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                  START  80 etlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                             ++e+i++g   g l+lm+ +   lsplv+ R+f f+Ry+rql+   wv vd+S d  ++ + +   +R+ +lpSg++i+++sng+s+
  SMil_00008641-RA_Salv 306 RIIEAIDTGilgGLLHLMYEKRHILSPLVApREFFFIRYCRQLNSSIWVMVDISYDFIKELQ-DVAPMRSWKLPSGCMIQDMSNGKST 392
                            *****************************99*************************999988.8999********************* PP

                            EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                            vtw+ehv++++++  h ++r lv sg+a gak+w +tl+r ce+
  SMil_00008641-RA_Salv 393 VTWIEHVHVDDKSLtHRMYRDLVCSGQAYGAKRWISTLKRMCER 436
                            **********99988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-20573IPR009057Homeodomain-like
SuperFamilySSF466892.51E-181080IPR009057Homeodomain-like
PROSITE profilePS5007116.861979IPR001356Homeobox domain
SMARTSM003893.0E-172183IPR001356Homeobox domain
CDDcd000869.48E-172280No hitNo description
PfamPF000461.3E-162277IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084842.27206439IPR002913START domain
SuperFamilySSF559611.92E-29209437No hitNo description
CDDcd088754.48E-94210435No hitNo description
SMARTSM002343.1E-31215436IPR002913START domain
PfamPF018527.2E-36220436IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-6274432IPR023393START-like domain
SuperFamilySSF559613.43E-9460672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MISSNCGNGS GEEEVYNAKR GKKQYHRHST QQIQQLEDFY KECPHPDKNQ RQQLSRELGL  60
DQKQIKFWFQ NKRTQIKAQN EKADNNALRS ENEKIHFENL AMQEALKSII CPACNGTCLG  120
DEEKSHILQR LKMENARLKQ EYQQTMDFFS NYMGNPAMPL LAMEPLKKKH EKHSLAEGMG  180
VAPLDHEHIP QNSENLISPQ DSTGTQEPDK SILIEAACGA MNELIELFRV NEPLWIKSSA  240
DGRYMLHRDS YDKLFPKSSH LKTTSARFES SKDSGEVAMA AIHLIEMLLD VNKWKDMFPT  300
IVMKARIIEA IDTGILGGLL HLMYEKRHIL SPLVAPREFF FIRYCRQLNS SIWVMVDISY  360
DFIKELQDVA PMRSWKLPSG CMIQDMSNGK STVTWIEHVH VDDKSLTHRM YRDLVCSGQA  420
YGAKRWISTL KRMCERFAFS MGITTRPKHE LEGVISSLEG QQNVMKLSHR MVKNFCEVLS  480
MSDKLDFPQL SDQSSGVRVS LRRSNGVGQP EGFIVSAATS LWLPLSKENL LNFFKDEKKR  540
AEWDVLASGN PVHAVACIPT GSDPGNCISI IQPFVPEETK MLMLQESSLD LLGATMIYTP  600
IDLPTMISVV NGDDTMQMPI LPSGFIISDD GRANKGTGAS MNSGTSYSIG SLLTVAFQIL  660
VCRNTLTKQL NMESVATVHT LISSTVQKIK LALDYSD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085930.10.0homeobox-leucine zipper protein ROC8 isoform X1
TrEMBLA0A4D9AJQ20.0A0A4D9AJQ2_SALSN; Homeobox-leucine zipper protein
STRINGMigut.H02245.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24902351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11