PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008639-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 451aa    MW: 49444.2 Da    PI: 6.4177
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008639-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-1678122147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r rWT+eE++++++a k++G   W++I +++g  +t+ q++s+ qk+
  SMil_00008639-RA_Salv  78 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-SKTAVQIRSHAQKF 122
                            78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1672127IPR009057Homeodomain-like
PROSITE profilePS5129421.05773127IPR017930Myb domain
TIGRFAMsTIGR015574.1E-1776125IPR006447Myb domain, plants
SMARTSM007174.0E-1377125IPR001005SANT/Myb domain
PfamPF002492.1E-1378121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-978118IPR009057Homeodomain-like
CDDcd001672.86E-1080123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
LFREEFGESD CFSAAMVIKG VIGGEECIVS GSPLPTNDEI SLDLDGQDVK DVQLNEQFAG  60
GDDFAPKVRK PYTITKQRER WTEEEHKKFL EALKLYGRAW RRIEEHVGSK TAVQIRSHAQ  120
KFFSKVARES NVGDGGLVKP VEIPPPRPKR KPMHPYPRKL GSPVKMGILI PERSASPNQS  180
PTSVLSVVGS DQSSGGADSC MPNGSSSPVS SSPLARTTAH IFGSEAPKLL SEDGVSSSQS  240
DREDENSSTD EEIPLELDLS PRKTFVNEAA TQSLKLFGKT LLVVDSSRST CNPESLDDDK  300
RVETCPYPLR VVPLKAAGNS TCEDAWRSLM QVHSSEMKNE LLYIQYTGNT TSSSAAPFPW  360
LSLASQSTRE VHSPTPIRAQ SNEGSSSGSN TDSVGAAARE ETSSFSSYKL SKRISANCRR  420
GFVPYKRCFT EQDSSAETVQ EREKQRIRLC L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085926.11e-136protein REVEILLE 1
TrEMBLA0A4D9B7Y10.0A0A4D9B7Y1_SALSN; MYB-related transcription factor LHY
STRINGXP_009790907.11e-89(Nicotiana sylvestris)
STRINGMigut.K00742.1.p6e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-57MYB_related family protein